Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.3e-222 776.2 428 100.0
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.9e-91 340.5 372 61.6
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 6.6e-89 332.0 339 64.6
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 2.5e-88 330.1 339 64.3
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 1.5e-72 277.7 385 51.7
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 1.3e-71 274.6 374 55.9
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 1.2e-66 258.1 287 63.4
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.1e-62 245.0 347 49.0
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 3.0e-57 226.9 336 50.0
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 4.7e-50 203.0 360 43.3
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 1.0e-49 201.8 380 43.2
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 3.9e-49 199.9 333 41.7
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 8.8e-49 198.7 274 49.6
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 3.3e-48 196.8 373 41.0
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.2e-45 188.3 374 39.6
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 5.9e-45 186.0 354 41.2
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 1.7e-44 184.5 365 40.3
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 1.7e-44 184.5 364 39.8
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 2.2e-44 184.1 364 39.8
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 8.5e-44 182.2 351 37.6
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.9e-43 181.0 371 38.8
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 7.2e-43 179.1 339 38.3
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.6e-42 177.9 347 37.2
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 4.7e-42 176.4 181 54.7
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 6.1e-42 176.0 359 39.0
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 1.8e-41 174.5 353 39.7
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 5.7e-40 169.5 347 38.6
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 7.4e-40 169.1 341 40.2
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 1.7e-39 167.9 348 44.5
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 6.3e-39 166.0 333 36.6
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 3.1e-38 163.7 303 43.2
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 5.3e-38 162.9 372 37.6
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 9.1e-38 162.2 338 39.3
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 2.0e-37 161.0 366 37.4
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 7.7e-37 159.1 244 45.9
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 1.5e-35 154.8 284 40.8
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.5e-35 154.1 242 45.5
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 1.0e-33 148.7 371 34.8
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 4.0e-33 146.7 385 33.5
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 5.2e-33 146.4 379 34.6
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 7.5e-32 142.5 268 41.4
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 1.7e-31 141.4 339 38.3
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.1e-30 138.7 268 39.9
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 3.1e-30 137.1 325 34.2
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 5.4e-30 136.3 324 35.2
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 1.2e-29 135.2 331 41.7
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 1.2e-29 135.2 353 35.1
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 3.5e-29 133.7 288 37.5
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 5.9e-29 132.9 486 30.0
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 6.5e-28 129.4 297 39.7
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 8.5e-28 129.0 288 36.5
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.5e-27 128.3 308 38.3
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 2.1e-26 124.4 340 36.5
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 6.1e-26 122.9 213 40.8
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 1.0e-25 122.1 354 34.7
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 2.3e-25 120.9 252 40.1
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 4.0e-25 120.2 323 33.4
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.5e-24 118.2 293 34.8
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 2.0e-24 117.9 318 34.6
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 9.8e-24 115.5 314 37.6
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 2.4e-22 110.9 301 36.5
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 1.2e-21 108.6 208 39.4
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 8.6e-20 102.4 322 32.0
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 1.1e-19 102.1 247 36.8
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.9e-19 101.3 322 31.7
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 3.3e-19 100.5 287 37.3
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 4.2e-19 100.1 298 33.9
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.6e-18 98.2 323 31.9
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 6.1e-18 96.3 280 33.6
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 1.8e-17 94.7 311 30.9
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 5.7e-16 89.7 60 73.3
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 7.5e-16 89.4 137 45.3
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 7.5e-16 89.4 275 32.7
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 3.2e-14 84.0 149 35.6
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 7.0e-14 82.8 221 37.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 4.6e-13 80.1 62 61.3
MELO3C024933.2 Cucumis melo HOM05D007421 ORTHO05D009203 4.6e-13 80.1 171 37.4
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 7.8e-13 79.3 62 61.3
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 2.3e-12 77.8 150 38.0
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.0e-12 76.6 62 61.3
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.0e-12 76.6 62 61.3
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 5.0e-12 76.6 62 59.7
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 6.6e-12 76.3 62 61.3
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 1.5e-11 75.1 225 32.0
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 7.3e-11 72.8 62 59.7
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 1.6e-10 71.6 183 35.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.6e-10 71.6 42 69.0
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 1.6e-10 71.6 42 69.0
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 2.8e-10 70.9 34 82.4
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.7e-10 70.1 62 59.7
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 6.2e-10 69.7 243 32.5
MCO11G228 Micromonas commoda HOM05D002710 ORTHO05D002905 2.3e-09 67.8 38 68.4
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 4.0e-09 67.0 59 64.4
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 4.0e-09 67.0 59 64.4
Cre03.g172800 Chlamydomonas reinhardtii HOM05D002710 ORTHO05D002905 5.2e-09 66.6 55 56.4
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 8.9e-09 65.9 90 41.1
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 8.9e-09 65.9 90 41.1
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 1.5e-08 65.1 85 47.1
Lalb_Chr12g0208501 Lupinus albus HOM05D007421 ORTHO05D009203 2.0e-08 64.7 199 35.2
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 2.6e-08 64.3 65 55.4
Prupe.4G263300 Prunus persica HOM05D007421 ORTHO05D009203 4.4e-08 63.5 95 45.3
Pp3c1_21370 Physcomitrium patens HOM05D002710 ORTHO05D002905 7.5e-08 62.8 74 45.9
Lalb_Chr12g0208511 Lupinus albus HOM05D007421 ORTHO05D009203 9.8e-08 62.4 57 56.1
Pp3c2_17030 Physcomitrium patens HOM05D002710 ORTHO05D002905 1.3e-07 62.0 127 33.9
Migut.B00639 Erythranthe guttata HOM05D007421 ORTHO05D009203 1.7e-07 61.6 80 46.2
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 1.7e-07 61.6 59 61.0
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.2e-07 61.2 63 49.2
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.9e-07 60.8 70 55.7
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 4.9e-07 60.1 141 33.3
EL10Ac2g04521 Beta vulgaris HOM05D002710 ORTHO05D002905 6.4e-07 59.7 36 61.1
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 8.3e-07 59.3 64 51.6
CiPaw.05G243800 Carya illinoinensis HOM05D002710 ORTHO05D002905 1.4e-06 58.5 40 55.0
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.4e-06 58.5 64 50.0
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.4e-06 58.5 64 53.1
Sabra10G0089300 Salix brachista HOM05D002710 ORTHO05D002905 1.4e-06 58.5 36 58.3
Sed0001518 Sechium edule HOM05D002710 ORTHO05D002905 1.4e-06 58.5 36 58.3
Ca_02335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 1.9e-06 58.2 86 44.2
QL01p003296 Quercus lobata HOM05D002710 ORTHO05D002905 1.9e-06 58.2 40 55.0
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 1.9e-06 58.2 40 55.0
QL01p003332 Quercus lobata HOM05D002710 ORTHO05D002905 1.9e-06 58.2 40 55.0
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.9e-06 58.2 63 52.4
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.9e-06 58.2 62 48.4
ClCG09G021270 Citrullus lanatus HOM05D007421 ORTHO05D009203 2.4e-06 57.8 75 52.0
Duzib268G0186 Durio zibethinus HOM05D002710 ORTHO05D002905 2.4e-06 57.8 36 58.3
ATR0053G009 Amborella trichopoda HOM05D002710 ORTHO05D002905 3.2e-06 57.4 36 55.6
Cfa015825 Carpinus fangiana HOM05D002710 ORTHO05D002905 3.2e-06 57.4 40 55.0
ClCG01G005960 Citrullus lanatus HOM05D002710 ORTHO05D002905 3.2e-06 57.4 36 58.3
Haze_00668 Corylus avellana HOM05D002710 ORTHO05D002905 3.2e-06 57.4 40 55.0
CsaV3_5G028730 Cucumis sativus L. HOM05D002710 ORTHO05D002905 3.2e-06 57.4 36 58.3
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 3.2e-06 57.4 65 46.2
Sed0018266 Sechium edule HOM05D002710 ORTHO05D002905 3.2e-06 57.4 36 58.3
GSVIVG01011819001 Vitis vinifera HOM05D002710 ORTHO05D002905 3.2e-06 57.4 36 58.3
Nitab4.5_0006574g0060 Nicotiana tabacum HOM05D001781 ORTHO05D001711 4.1e-06 57.0 64 51.6
EL10Ac6g14280 Beta vulgaris HOM05D002710 ORTHO05D002905 5.4e-06 56.6 36 55.6
COL.COLO4_06823 Corchorus olitorius HOM05D002710 ORTHO05D002905 5.4e-06 56.6 36 55.6
Potri.010G118700 Populus trichocarpa HOM05D002710 ORTHO05D002905 5.4e-06 56.6 36 55.6
Solyc05g008670.3 Solanum lycopersicum HOM05D002710 ORTHO05D002905 5.4e-06 56.6 40 52.5
Sopen05g004490 Solanum pennellii HOM05D002710 ORTHO05D002905 5.4e-06 56.6 40 52.5
PGSC0003DMG400030567 Solanum tuberosum HOM05D002710 ORTHO05D002905 5.4e-06 56.6 40 52.5
Atru.chr11.276 Acer truncatum HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
Atru.chr11.290 Acer truncatum HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
AUR62023217 Chenopodium quinoa HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
AUR62044613 Chenopodium quinoa HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
Ciclev10015908m.g Citrus clementina HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
Duzib248G1261 Durio zibethinus HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
Gohir.A12G141300 Gossypium hirsutum HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
Gohir.D12G146200 Gossypium hirsutum HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
Gorai.008G157500 Gossypium raimondii HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
MD16G1035800 Malus domestica HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 58.3
Manes.14G108300 Manihot esculenta HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
Os01g0645000 Oryza sativa ssp. japonica HOM05D002710 ORTHO05D002905 7.0e-06 56.2 85 35.3
Os05g0576300 Oryza sativa ssp. japonica HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
RcHm_v2.0_Chr4g0407541 Rosa chinensis HOM05D002710 ORTHO05D002905 7.0e-06 56.2 40 55.0
SalBow3G4526 Salvia bowleyana HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
Thecc.02G219500 Theobroma cacao HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
TWI79G0443 Tripterygium wilfordii HOM05D002710 ORTHO05D002905 7.0e-06 56.2 36 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2304 Anthoceros agrestis HOM05D002710 ORTHO05D002905 9.2e-06 55.8 62 41.9
DCAR_007271 Daucus carota HOM05D002710 ORTHO05D002905 9.2e-06 55.8 44 52.3
Oeu050388.1 Olea europaea HOM05D002710 ORTHO05D002905 9.2e-06 55.8 36 55.6
Sc11g0008490 Simmondsia chinensis HOM05D002710 ORTHO05D002905 9.2e-06 55.8 36 61.1
TAR374G0062 Trochodendron aralioides HOM05D002710 ORTHO05D002905 9.2e-06 55.8 36 55.6
HPP92_008058 Vanilla planifolia HOM05D002710 ORTHO05D002905 9.2e-06 55.8 36 55.6


User provided reference genes

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