Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 2.7e-100 368.6 181 100.0
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 4.1e-56 221.9 118 90.7
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.2e-55 220.3 116 88.8
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.2e-55 220.3 116 88.8
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.5e-53 212.6 116 84.5
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.8e-51 206.5 115 84.3
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 4.4e-50 201.8 117 84.6
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 9.8e-50 200.7 105 86.7
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.3e-49 200.3 118 79.7
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.8e-48 196.4 111 80.2
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.4e-48 196.1 114 80.7
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 3.1e-48 195.7 120 77.5
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 5.4e-48 194.9 113 79.6
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.2e-47 193.7 116 77.6
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.6e-47 193.4 117 77.8
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.0e-47 193.0 107 78.5
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 2.7e-47 192.6 112 79.5
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 5.9e-47 191.4 115 80.9
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.0e-46 190.7 116 75.0
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 2.3e-46 189.5 114 74.6
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 5.0e-46 188.3 120 75.8
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 6.6e-46 188.0 112 75.9
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 8.6e-46 187.6 116 77.6
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.9e-45 186.4 116 75.0
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.9e-45 186.4 104 82.7
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.9e-45 186.4 104 82.7
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 3.3e-45 185.7 109 78.9
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 3.3e-45 185.7 110 80.0
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 9.5e-45 184.1 104 81.7
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.1e-44 183.0 114 77.2
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 2.1e-44 183.0 117 76.9
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.8e-44 182.6 114 77.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 3.6e-44 182.2 111 76.6
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.7e-44 181.8 109 77.1
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 4.7e-44 181.8 116 74.1
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 4.7e-44 181.8 111 74.8
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 6.1e-44 181.4 120 72.5
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 6.1e-44 181.4 104 79.8
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 6.1e-44 181.4 116 73.3
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.0e-43 180.6 100 82.0
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.0e-43 180.6 111 73.9
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.4e-43 180.3 97 83.5
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 4.0e-43 178.7 118 74.6
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 4.0e-43 178.7 100 81.0
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 4.0e-43 178.7 110 75.5
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 5.2e-43 178.3 133 65.4
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 6.8e-43 177.9 112 75.0
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 8.9e-43 177.6 100 81.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.2e-42 177.2 115 73.9
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.5e-42 176.8 100 80.0
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.5e-42 176.8 102 76.5
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.0e-42 176.4 107 73.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 3.4e-42 175.6 107 73.8
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 3.4e-42 175.6 107 77.6
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 7.5e-42 174.5 114 72.8
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 9.8e-42 174.1 107 76.6
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 9.8e-42 174.1 107 76.6
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.3e-41 173.7 112 73.2
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.3e-41 173.7 117 71.8
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.7e-41 173.3 136 64.0
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.8e-41 172.6 108 75.9
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 2.8e-41 172.6 112 73.2
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 2.8e-41 172.6 100 78.0
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.8e-41 172.6 102 79.4
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.8e-41 172.6 115 72.2
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.7e-41 172.2 97 78.4
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 4.9e-41 171.8 118 72.0
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 4.9e-41 171.8 116 70.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.8e-40 169.9 91 83.5
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.8e-40 169.9 103 75.7
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.4e-40 169.5 115 71.3
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 3.1e-40 169.1 101 76.2
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 5.4e-40 168.3 110 71.8
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 5.4e-40 168.3 106 75.5
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 7.0e-40 167.9 111 72.1
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 7.0e-40 167.9 107 75.7
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 9.2e-40 167.5 109 73.4
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 1.6e-39 166.8 116 69.8
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.6e-39 166.8 116 69.8
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.6e-39 166.8 116 69.8
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.6e-39 166.8 116 69.8
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.7e-39 166.0 114 71.1
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.5e-39 165.6 115 69.6
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 3.5e-39 165.6 104 77.9
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 3.5e-39 165.6 106 72.6
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 3.5e-39 165.6 107 73.8
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.5e-39 165.6 107 73.8
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.5e-39 165.6 107 73.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 4.5e-39 165.2 117 70.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 4.5e-39 165.2 118 70.3
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 5.9e-39 164.9 117 69.2
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 5.9e-39 164.9 116 70.7
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 7.8e-39 164.5 98 76.5
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.8e-39 164.5 97 79.4
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 7.8e-39 164.5 115 67.8
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 7.8e-39 164.5 115 67.8
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.0e-38 164.1 115 68.7
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.3e-38 163.7 116 69.0
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.3e-38 163.7 85 84.7
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.3e-38 163.7 85 84.7
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.3e-38 163.7 99 75.8
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.3e-38 163.7 101 78.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.7e-38 163.3 85 84.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.3e-38 162.9 115 67.8
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.3e-38 162.9 115 67.8
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 2.3e-38 162.9 115 67.8
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.9e-38 162.5 85 83.5
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 2.9e-38 162.5 117 68.4
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 2.9e-38 162.5 127 64.6
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.9e-38 162.2 115 68.7
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 5.0e-38 161.8 115 67.8
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.0e-38 161.8 85 83.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 6.6e-38 161.4 85 83.5
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 1.1e-37 160.6 108 70.4
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-37 159.8 116 68.1
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.9e-37 159.8 106 71.7
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.9e-37 159.8 115 67.8
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 2.5e-37 159.5 107 72.9
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 2.5e-37 159.5 107 72.9
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 2.5e-37 159.5 107 72.9
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.3e-37 159.1 100 75.0
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 3.3e-37 159.1 113 69.0
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 4.3e-37 158.7 95 78.9
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 4.3e-37 158.7 106 70.8
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 5.6e-37 158.3 107 72.9
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 5.6e-37 158.3 107 72.9
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 5.6e-37 158.3 105 74.3
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-36 157.1 119 64.7
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-36 157.1 119 64.7
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 3.6e-36 155.6 116 68.1
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 4.7e-36 155.2 95 80.0
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.0e-35 154.1 113 61.1
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.8e-35 153.3 105 67.6
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.2e-34 150.6 80 82.5
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 3.4e-34 149.1 102 66.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 4.4e-34 148.7 77 84.4
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.9e-33 146.0 111 62.2
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.9e-33 146.0 118 66.1
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 8.3e-33 144.4 115 60.9
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.4e-32 142.9 82 76.8
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.2e-31 140.6 112 59.8
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 2.8e-28 129.4 112 58.0
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 4.9e-25 118.6 98 61.2
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 4.1e-24 115.5 103 58.3
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 2.1e-23 113.2 65 83.1
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 4.6e-23 112.1 64 81.2
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 8.6e-22 107.8 69 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.1e-21 107.5 70 70.0
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 3.3e-21 105.9 66 80.3
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.2e-20 104.0 105 52.4
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 6.2e-20 101.7 77 67.5
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 9.9e-18 94.4 55 78.2
Dinv15458 Davidia involucrata HOM05D002364 ORTHO05D002540 5.4e-16 88.6 49 91.8
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 2.3e-14 83.2 73 50.7
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-13 80.1 66 60.6
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 2.8e-12 76.3 62 56.5
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.8e-12 76.3 55 65.5
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 2.4e-11 73.2 57 59.6
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 2.4e-08 63.2 64 53.1


User provided reference genes

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