Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 2.5e-161 572.0 280 100.0
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 1.8e-114 416.4 277 72.9
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 2.0e-102 376.3 272 69.1
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 2.9e-101 372.5 272 69.5
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 3.8e-101 372.1 272 69.5
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 2.3e-98 362.8 272 68.0
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 9.0e-95 350.9 274 66.1
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 2.0e-94 349.7 275 64.7
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 2.0e-94 349.7 272 67.3
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 1.7e-93 346.7 288 62.2
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 5.0e-93 345.1 279 65.6
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 6.5e-93 344.7 273 62.6
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 2.5e-92 342.8 274 64.2
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 3.2e-92 342.4 273 65.9
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 3.2e-92 342.4 276 62.3
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 1.2e-91 340.5 274 65.3
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 1.0e-90 337.4 272 64.7
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 3.0e-90 335.9 277 63.9
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 6.7e-90 334.7 275 64.4
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 1.1e-89 334.0 282 62.8
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 2.0e-89 333.2 278 62.9
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 4.3e-89 332.0 214 75.2
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 2.8e-88 329.3 276 63.0
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 1.8e-87 326.6 277 63.2
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 1.8e-87 326.6 213 74.2
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 2.4e-87 326.2 280 60.0
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 4.1e-87 325.5 215 71.6
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 6.9e-87 324.7 277 63.2
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 9.1e-87 324.3 282 60.6
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 9.1e-87 324.3 282 60.6
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 2.0e-86 323.2 273 63.0
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 2.6e-86 322.8 278 60.1
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 5.9e-86 321.6 273 60.8
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.7e-85 320.1 283 60.1
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 8.5e-85 317.8 274 60.6
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 1.1e-84 317.4 274 60.6
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.4e-84 317.0 282 59.6
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 1.9e-84 316.6 274 58.4
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 5.5e-84 315.1 272 60.3
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 5.5e-84 315.1 274 59.5
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 3.6e-83 312.4 278 60.1
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 3.6e-83 312.4 274 58.0
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 7.9e-83 311.2 189 78.8
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 2.3e-82 309.7 281 58.0
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 2.3e-82 309.7 275 61.5
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 3.9e-82 308.9 271 59.8
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 2.0e-81 306.6 276 59.1
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 2.8e-80 302.8 242 62.4
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 3.7e-80 302.4 276 58.3
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 4.8e-80 302.0 272 56.6
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 6.3e-80 301.6 271 57.9
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 8.2e-80 301.2 273 58.2
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 1.5e-78 297.0 285 54.4
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 2.0e-78 296.6 274 57.7
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 3.5e-78 295.8 208 73.1
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.7e-77 293.5 208 72.1
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 1.7e-77 293.5 272 57.4
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 6.5e-77 291.6 272 54.8
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 1.1e-76 290.8 267 58.1
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 3.2e-76 289.3 274 54.4
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 2.1e-75 286.6 206 64.6
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 6.1e-75 285.0 281 54.1
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 1.8e-74 283.5 273 55.3
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 1.8e-74 283.5 275 54.5
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 3.0e-74 282.7 273 53.8
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 6.7e-74 281.6 202 65.8
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 1.5e-73 280.4 279 53.4
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 3.3e-73 279.3 279 57.0
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 7.4e-73 278.1 274 55.8
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 7.4e-73 278.1 227 60.8
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 1.8e-71 273.5 272 52.9
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 1.8e-71 273.5 272 52.9
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 7.0e-71 271.6 273 55.7
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 1.2e-70 270.8 268 54.5
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 4.5e-70 268.9 271 55.4
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 1.0e-69 267.7 283 50.9
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 2.9e-69 266.2 283 50.9
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 1.1e-68 264.2 275 53.5
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 2.5e-68 263.1 274 51.8
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 2.5e-68 263.1 274 51.8
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 2.5e-68 263.1 274 51.8
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 2.5e-68 263.1 208 60.1
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 3.2e-68 262.7 207 58.9
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 4.7e-67 258.8 271 51.7
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 6.8e-66 255.0 272 51.1
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 3.4e-65 252.7 282 51.4
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 1.3e-64 250.8 270 49.6
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 1.7e-64 250.4 270 53.0
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 4.8e-64 248.8 213 59.6
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 1.8e-63 246.9 272 52.6
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 4.1e-63 245.7 253 53.0
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 1.0e-61 241.1 246 51.2
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 5.5e-60 235.3 275 49.5
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 9.4e-60 234.6 216 55.1
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 2.7e-59 233.0 205 56.1
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.0e-58 231.1 219 54.3
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 2.4e-55 219.9 210 53.8
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 4.5e-54 215.7 234 47.4
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 5.9e-54 215.3 234 47.4
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.2e-51 207.6 213 52.6
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 6.1e-51 205.3 188 59.0
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 6.1e-51 205.3 152 65.8
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 5.9e-46 188.7 212 52.4
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 1.3e-37 161.0 154 53.2
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 5.6e-36 155.6 205 40.0
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 2.9e-32 143.3 185 39.5
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 1.1e-26 124.8 190 41.1
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 4.6e-22 109.4 186 33.9
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 1.5e-20 104.4 191 33.0
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 8.1e-19 98.6 64 75.0
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 8.1e-19 98.6 145 35.2
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.4e-18 97.8 63 69.8
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 3.1e-18 96.7 75 58.7
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 1.4e-15 87.8 124 37.1
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 2.1e-14 84.0 71 59.2
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 6.0e-14 82.4 71 57.7
Nn3g21845 Nelumbo nucifera HOM05D006815 ORTHO05D008536 1.4e-07 61.2 42 71.4


User provided reference genes

Program Settings