Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.5e-236 822.4 409 100.0
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.5e-204 714.5 409 83.4
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.3e-203 712.2 409 83.1
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 5.0e-203 711.1 409 84.8
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 6.0e-196 687.6 411 81.0
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.0e-195 686.8 409 82.2
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 5.6e-194 681.0 409 81.9
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 7.3e-194 680.6 409 79.5
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.6e-193 679.5 409 80.9
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 4.7e-193 677.9 409 80.7
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 8.0e-193 677.2 409 79.2
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 1.1e-192 676.8 409 79.7
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 7.5e-191 670.6 411 78.1
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.3e-190 669.8 409 78.5
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 4.9e-190 667.9 410 79.3
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.1e-189 666.8 409 78.7
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 3.2e-189 665.2 409 78.7
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.1e-189 664.8 409 79.2
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 7.8e-188 660.6 409 76.8
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.7e-187 659.4 409 77.8
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.3e-187 659.1 411 76.2
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.3e-187 659.1 409 79.0
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 8.6e-187 657.1 409 77.8
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.1e-186 656.8 409 78.0
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 1.9e-186 656.0 409 77.5
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 4.3e-186 654.8 408 78.4
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 4.3e-186 654.8 408 78.4
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 9.5e-186 653.7 408 77.9
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 1.2e-185 653.3 410 77.8
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.6e-185 652.9 409 77.0
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 2.1e-185 652.5 409 77.8
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 2.8e-185 652.1 409 76.5
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 2.8e-185 652.1 409 76.0
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 4.7e-185 651.4 409 79.0
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 6.2e-185 651.0 409 76.3
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.2e-185 651.0 409 76.3
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.8e-184 649.4 409 76.0
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 2.3e-184 649.0 409 75.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 3.1e-184 648.7 409 77.8
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 4.0e-184 648.3 409 76.5
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.6e-183 645.6 409 77.8
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.6e-183 645.6 409 75.1
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 5.8e-183 644.4 409 77.3
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 7.5e-183 644.0 409 77.0
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 9.9e-183 643.7 409 75.8
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.2e-182 642.5 440 74.1
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 2.9e-182 642.1 409 77.5
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 3.7e-182 641.7 409 76.3
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 6.4e-182 641.0 409 75.3
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 6.4e-182 641.0 409 76.0
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.1e-181 640.2 409 75.3
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.4e-181 639.0 409 75.1
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 3.2e-181 638.6 409 77.5
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 3.2e-181 638.6 410 76.1
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 7.1e-181 637.5 410 76.1
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 1.2e-180 636.7 409 75.1
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 3.5e-180 635.2 410 75.9
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 3.5e-180 635.2 432 72.2
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 6.0e-180 634.4 408 74.3
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.8e-180 634.0 403 75.4
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.7e-179 632.9 399 75.7
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.3e-179 632.5 399 75.9
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 3.9e-179 631.7 409 72.9
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 5.1e-179 631.3 409 75.6
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.1e-178 630.2 410 74.6
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.2e-177 626.7 401 74.8
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 2.1e-177 625.9 409 73.3
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 2.8e-177 625.5 406 73.2
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.8e-177 625.5 406 74.6
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 4.7e-177 624.8 356 82.9
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 8.1e-177 624.0 409 74.8
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 3.1e-176 622.1 409 73.6
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 5.2e-176 621.3 403 73.9
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 2.0e-175 619.4 409 74.8
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 9.9e-175 617.1 409 72.9
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.3e-174 616.7 410 74.6
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 2.2e-174 615.9 403 73.7
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.9e-173 612.8 403 73.9
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 4.2e-173 611.7 403 73.7
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 9.2e-173 610.5 495 65.1
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 9.2e-173 610.5 403 74.4
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 3.5e-172 608.6 403 74.4
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.6e-172 608.2 409 72.9
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.9e-170 602.8 406 72.2
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 1.9e-170 602.8 409 72.1
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 3.3e-170 602.1 406 72.2
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 4.3e-170 601.7 409 70.4
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 3.6e-169 598.6 409 68.9
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 4.7e-169 598.2 361 79.8
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 6.2e-169 597.8 409 71.1
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.1e-168 597.0 406 70.4
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.8e-168 596.3 412 69.7
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 3.1e-168 595.5 412 68.9
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 3.1e-168 595.5 412 68.9
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 3.1e-168 595.5 412 68.9
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 5.3e-168 594.7 412 68.9
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 5.3e-168 594.7 412 68.7
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 6.9e-168 594.3 412 68.7
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.6e-167 592.4 400 71.0
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 9.9e-167 590.5 409 68.7
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 4.9e-166 588.2 410 69.3
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 6.4e-166 587.8 409 69.9
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 5.4e-165 584.7 402 72.4
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 3.5e-164 582.0 412 68.4
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 4.6e-164 581.6 403 71.2
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 3.0e-163 578.9 403 71.2
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 3.0e-163 578.9 409 68.2
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 6.6e-163 577.8 403 71.0
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 3.3e-162 575.5 406 67.2
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.3e-162 575.1 403 69.0
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.4e-157 560.1 406 67.0
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 1.4e-157 560.1 406 67.2
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 2.4e-157 559.3 409 68.0
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 5.4e-157 558.1 409 66.0
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 7.9e-156 554.3 351 76.6
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 2.5e-154 549.3 407 66.1
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.5e-151 540.0 314 85.0
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.0e-147 527.3 405 63.0
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 3.8e-142 508.8 408 61.0
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 3.1e-136 489.2 416 57.2
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.0e-135 486.5 406 58.9
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.3e-134 483.8 315 74.9
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 5.5e-133 478.4 409 60.1
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.2e-116 424.1 268 78.4
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 6.7e-115 418.3 361 57.6
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 7.4e-114 414.8 273 72.9
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 5.5e-109 398.7 314 62.1
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.6e-108 397.1 273 67.4
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 2.2e-105 386.7 429 47.3
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 3.1e-104 382.9 410 48.0
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.9e-103 378.6 413 54.5
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 5.5e-101 372.1 421 49.2
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 9.8e-90 334.7 417 45.3
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 2.8e-84 316.6 254 63.8
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 9.2e-80 301.6 161 92.5
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 1.0e-78 298.1 174 87.4
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 2.5e-77 293.5 176 79.5
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.6e-76 290.8 443 38.6
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.7e-73 280.8 175 78.3
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.3e-61 239.6 214 55.6
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.9e-57 226.9 164 62.8
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 6.6e-54 215.7 193 57.0
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 2.5e-53 213.8 408 33.6
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 4.3e-53 213.0 135 74.8
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 2.6e-50 203.8 112 84.8
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 2.2e-49 200.7 151 62.3
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 2.7e-39 167.2 93 83.9
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 3.2e-32 143.7 97 67.0
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 5.3e-27 126.3 98 69.4
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 2.6e-18 97.4 85 63.5
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 3.4e-18 97.1 226 30.5
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 2.9e-17 94.0 70 64.3
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.6e-15 88.2 57 73.7


User provided reference genes

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