Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 6.8e-96 354.0 179 100.0
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 9.6e-82 307.0 179 84.9
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 9.6e-82 307.0 179 84.9
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 5.3e-80 301.2 179 82.1
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 6.9e-80 300.8 178 84.8
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.2e-79 300.1 179 81.6
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.2e-79 300.1 179 85.5
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.5e-79 299.7 179 82.7
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.0e-79 299.3 180 82.8
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 2.6e-79 298.9 178 84.3
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 4.4e-79 298.1 179 80.4
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 9.9e-79 297.0 179 83.2
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 9.9e-79 297.0 178 82.6
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.3e-78 296.6 179 82.7
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.3e-78 296.6 179 80.4
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.9e-78 295.4 179 82.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 4.9e-78 294.7 179 82.7
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.9e-78 294.7 180 84.4
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 8.4e-78 293.9 179 83.8
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.1e-77 293.5 179 82.7
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 4.2e-77 291.6 173 83.8
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 4.2e-77 291.6 178 80.9
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 4.2e-77 291.6 179 79.9
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.6e-76 289.7 179 82.1
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.6e-76 289.7 178 79.8
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.1e-76 289.3 179 81.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.1e-76 289.3 179 80.4
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 2.1e-76 289.3 178 80.3
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 7.8e-76 287.3 179 79.3
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 7.8e-76 287.3 179 82.1
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.3e-75 286.6 178 78.7
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 3.0e-75 285.4 179 79.9
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 3.0e-75 285.4 179 77.7
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 3.0e-75 285.4 179 81.0
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 79.9
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 6.6e-75 284.3 168 83.3
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 8.7e-75 283.9 179 80.4
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 8.7e-75 283.9 180 78.3
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.5e-74 283.1 176 80.1
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.9e-74 282.7 178 77.5
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 2.5e-74 282.3 179 80.4
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 3.3e-74 282.0 179 79.9
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.6e-74 281.2 179 79.3
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.6e-74 281.2 179 79.3
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.6e-74 281.2 179 78.8
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 7.3e-74 280.8 181 78.5
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 7.3e-74 280.8 180 77.8
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 7.3e-74 280.8 175 80.6
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 79.3
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 1.3e-73 280.0 179 76.5
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.3e-73 280.0 179 75.4
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.3e-73 280.0 179 78.8
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.6e-73 279.6 179 78.8
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.6e-73 279.6 179 77.1
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.1e-73 279.3 179 78.8
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 2.1e-73 279.3 179 78.2
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.1e-73 279.3 179 76.0
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 78.8
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.8e-73 278.9 168 82.1
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 78.2
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 4.8e-73 278.1 178 77.5
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 78.2
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 77.7
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 77.1
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 78.2
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 77.1
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 77.7
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.8e-72 276.2 179 76.0
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.8e-72 276.2 180 77.2
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 78.2
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 77.7
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 77.1
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 77.1
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 77.1
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 74.9
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 74.9
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 77.1
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.9e-72 274.2 179 76.5
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 9.0e-72 273.9 179 78.8
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 2.6e-71 272.3 171 80.1
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 77.7
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.8e-71 271.2 221 67.4
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.3e-70 270.0 178 74.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.3e-70 270.0 177 77.4
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 74.9
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 76.5
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 6.4e-70 267.7 193 71.5
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 74.3
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.1e-69 266.9 171 78.9
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 77.7
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.4e-69 266.5 158 84.8
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.9e-69 266.2 207 68.6
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 2.4e-69 265.8 171 77.8
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 77.1
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 74.3
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 5.4e-69 264.6 167 79.0
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 7.1e-69 264.2 168 76.8
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 7.1e-69 264.2 168 79.8
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 73.2
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 7.9e-68 260.8 168 76.2
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.3e-67 259.2 177 74.0
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 3.0e-67 258.8 168 78.0
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 3.9e-67 258.5 178 73.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 3.9e-67 258.5 167 76.0
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 5.1e-67 258.1 168 75.0
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 6.7e-67 257.7 168 75.6
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.1e-66 256.9 168 74.4
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.5e-66 256.5 168 75.0
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.9e-66 256.1 175 72.6
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.9e-66 256.1 175 70.9
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.5e-66 255.8 176 76.1
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.5e-66 255.8 182 72.0
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 4.3e-66 255.0 175 70.9
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 9.6e-66 253.8 175 70.9
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.3e-65 253.4 160 78.1
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.6e-65 253.1 179 70.4
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.6e-65 253.1 175 75.4
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.7e-65 251.9 212 66.5
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 4.0e-64 248.4 168 72.6
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 9.0e-64 247.3 175 73.1
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 3.4e-63 245.4 174 73.0
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 2.1e-60 236.1 178 70.8
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 6.0e-60 234.6 168 71.4
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.1e-58 230.3 150 78.0
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 3.3e-58 228.8 150 77.3
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 3.3e-58 228.8 147 78.2
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.6e-57 226.5 179 67.0
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 5.8e-55 218.0 120 92.5
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.1e-52 208.0 170 67.6
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 2.0e-47 193.0 168 63.1
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.7e-46 189.9 129 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 2.2e-46 189.5 162 57.4
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 8.5e-46 187.6 117 84.6
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 5.5e-45 184.9 162 56.8
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 2.7e-44 182.6 115 80.0
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.0e-43 180.6 168 53.6
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.8e-43 179.9 171 52.6
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.1e-42 177.2 165 53.3
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.1e-40 169.1 160 60.0
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.1e-37 160.6 188 53.7
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 3.9e-35 152.1 105 73.3
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 6.7e-35 151.4 222 41.0
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 6.7e-35 151.4 86 84.9
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 8.8e-35 151.0 170 50.0
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 1.1e-34 150.6 161 51.6
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.6e-34 149.4 83 84.3
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 9.7e-34 147.5 83 83.1
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.8e-33 145.2 83 83.1
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 3.1e-32 142.5 163 47.9
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 5.0e-30 135.2 94 71.3
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.5e-29 133.7 142 52.1
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.1e-28 128.3 93 68.8
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 4.4e-26 122.1 86 70.9
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 5.7e-26 121.7 117 59.0
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 2.4e-24 116.3 97 61.9
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 3.5e-23 112.5 147 49.0
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 1.7e-22 110.2 75 76.0
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 3.8e-22 109.0 85 67.1
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 2.9e-14 82.8 218 33.5
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 4.2e-13 79.0 60 68.3
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 8.0e-12 74.7 146 38.4
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.4e-11 73.9 51 68.6
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 7.5e-10 68.2 54 64.8
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 2.4e-08 63.2 85 47.1
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 1.2e-07 60.8 44 61.4


User provided reference genes

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