Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 3.4e-42 175.3 141 100.0
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 1.5e-21 106.7 168 44.6
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 1.5e-21 106.7 170 45.3
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 9.7e-21 104.0 170 50.0
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 9.7e-21 104.0 170 50.0
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 1.3e-20 103.6 170 44.7
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 1.3e-20 103.6 170 44.7
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 1.7e-20 103.2 170 48.2
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 2.8e-20 102.4 170 43.5
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 3.7e-20 102.1 170 43.5
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 3.7e-20 102.1 170 44.1
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 6.3e-20 101.3 170 51.8
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 6.3e-20 101.3 170 55.3
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 1.4e-19 100.1 170 41.2
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 1.8e-19 99.8 170 44.7
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 1.8e-19 99.8 170 42.4
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 2.4e-19 99.4 170 44.7
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 6.9e-19 97.8 170 41.8
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 6.9e-19 97.8 170 47.1
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 6.9e-19 97.8 170 41.8
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 6.9e-19 97.8 170 56.5
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 9.1e-19 97.4 170 44.7
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 1.2e-18 97.1 170 41.8
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 1.2e-18 97.1 170 43.5
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 1.2e-18 97.1 170 49.4
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 2.0e-18 96.3 170 44.1
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 2.0e-18 96.3 97 56.7
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 2.6e-18 95.9 170 45.3
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 2.6e-18 95.9 170 52.9
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 2.6e-18 95.9 97 55.7
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 2.6e-18 95.9 170 42.9
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 4.5e-18 95.1 170 42.9
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 4.5e-18 95.1 170 43.5
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 5.9e-18 94.7 97 55.7
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 5.9e-18 94.7 172 40.1
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 7.7e-18 94.4 97 56.7
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 7.7e-18 94.4 170 43.5
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 7.7e-18 94.4 100 54.0
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 1.0e-17 94.0 170 56.5
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.3e-17 93.6 97 55.7
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 1.3e-17 93.6 170 44.1
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 1.3e-17 93.6 100 54.0
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 2.9e-17 92.4 170 40.6
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 2.9e-17 92.4 170 41.2
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 2.9e-17 92.4 170 40.0
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 2.9e-17 92.4 170 54.7
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 2.9e-17 92.4 170 55.9
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 2.9e-17 92.4 170 42.4
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 3.8e-17 92.0 94 55.3
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 3.8e-17 92.0 97 54.6
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 5.0e-17 91.7 99 53.5
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 5.0e-17 91.7 170 55.3
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 5.0e-17 91.7 97 54.6
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 6.5e-17 91.3 170 52.4
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 8.5e-17 90.9 170 40.6
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 8.5e-17 90.9 170 46.5
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 8.5e-17 90.9 99 53.5
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 8.5e-17 90.9 170 47.6
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 8.5e-17 90.9 95 54.7
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 1.1e-16 90.5 170 40.6
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 1.1e-16 90.5 97 54.6
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 1.1e-16 90.5 100 52.0
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 1.4e-16 90.1 170 40.6
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.4e-16 90.1 170 40.6
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.4e-16 90.1 97 55.7
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 1.9e-16 89.7 97 54.6
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 1.9e-16 89.7 97 54.6
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 1.9e-16 89.7 97 54.6
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 1.9e-16 89.7 97 54.6
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 1.9e-16 89.7 97 54.6
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 2.5e-16 89.4 97 53.6
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 2.5e-16 89.4 170 40.0
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 2.5e-16 89.4 170 51.8
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 2.5e-16 89.4 97 53.6
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 2.5e-16 89.4 170 40.6
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 2.5e-16 89.4 95 51.6
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 3.2e-16 89.0 99 52.5
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 3.2e-16 89.0 95 53.7
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 3.2e-16 89.0 171 40.9
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 3.2e-16 89.0 171 40.9
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 4.2e-16 88.6 97 53.6
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 5.5e-16 88.2 92 54.3
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 5.5e-16 88.2 95 53.7
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 5.5e-16 88.2 97 53.6
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 7.2e-16 87.8 97 52.6
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 7.2e-16 87.8 97 53.6
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 7.2e-16 87.8 170 40.6
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 7.2e-16 87.8 170 45.9
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 9.4e-16 87.4 173 39.9
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 9.4e-16 87.4 97 52.6
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 9.4e-16 87.4 97 52.6
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 9.4e-16 87.4 97 52.6
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 9.4e-16 87.4 97 52.6
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 9.4e-16 87.4 170 45.3
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 9.4e-16 87.4 170 39.4
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 1.2e-15 87.0 97 52.6
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 1.2e-15 87.0 170 41.2
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.2e-15 87.0 170 41.2
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 1.2e-15 87.0 170 40.6
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 1.6e-15 86.7 170 42.4
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 1.6e-15 86.7 97 50.5
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 2.1e-15 86.3 95 50.5
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 2.7e-15 85.9 170 38.8
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 2.7e-15 85.9 170 41.2
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 4.7e-15 85.1 92 54.3
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 7.9e-15 84.3 171 40.9
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 1.0e-14 84.0 170 46.5
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 1.0e-14 84.0 170 39.4
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 1.0e-14 84.0 90 53.3
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 1.8e-14 83.2 97 49.5
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 1.8e-14 83.2 169 39.1
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 1.8e-14 83.2 97 48.5
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 3.9e-14 82.0 169 40.2
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 5.2e-14 81.6 173 44.5
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 5.2e-14 81.6 94 48.9
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 1.1e-13 80.5 50 76.0
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 5.9e-10 68.2 97 40.2
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 8.5e-09 64.3 64 45.3
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 1.5e-08 63.5 50 58.0
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.9e-08 63.2 148 36.5
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 1.9e-08 63.2 81 46.9
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 1.9e-08 63.2 50 54.0
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 2.5e-08 62.8 50 54.0
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 9.4e-08 60.8 56 48.2
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 1.2e-07 60.5 52 53.8


User provided reference genes

Program Settings