Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 2.6e-112 408.7 202 100.0
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 1.6e-69 266.5 173 80.3
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 3.8e-42 175.6 121 77.7
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.6e-29 133.7 152 53.9
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 6.0e-24 115.2 161 46.6
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.6e-21 107.1 152 46.7
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.6e-21 107.1 152 46.7
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 4.8e-21 105.5 152 46.7
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 8.1e-21 104.8 151 47.7
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.4e-20 104.0 151 47.0
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.0e-20 102.4 151 44.4
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 5.3e-20 102.1 151 46.4
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 1.2e-19 100.9 159 42.1
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.5e-19 100.5 151 46.4
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 3.4e-19 99.4 152 42.8
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.4e-19 99.4 142 43.0
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.5e-19 99.0 142 42.3
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 5.8e-19 98.6 152 41.4
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.8e-18 95.9 152 42.1
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 3.8e-18 95.9 152 43.4
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 6.5e-18 95.1 151 42.4
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 6.5e-18 95.1 149 45.0
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.1e-17 94.4 144 41.0
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.1e-17 94.4 144 40.3
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 2.5e-17 93.2 151 40.4
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.5e-17 93.2 149 45.0
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.5e-17 93.2 146 44.5
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 3.2e-17 92.8 161 41.6
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.2e-17 92.8 138 44.2
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 5.5e-17 92.0 154 39.6
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 7.1e-17 91.7 154 39.6
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 7.1e-17 91.7 144 40.3
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 9.3e-17 91.3 151 40.4
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.6e-16 90.5 151 39.7
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.6e-16 90.5 138 43.5
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 1.6e-16 90.5 144 40.3
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.6e-16 90.5 151 39.7
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 1.6e-16 90.5 152 40.8
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 2.1e-16 90.1 152 40.8
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 3.5e-16 89.4 153 39.9
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 3.5e-16 89.4 149 43.6
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 7.9e-16 88.2 153 37.9
Dinv17544 Davidia involucrata HOM05D033086 ORTHO05D179060 7.9e-16 88.2 96 54.2
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 7.9e-16 88.2 152 40.8
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.3e-15 87.4 152 37.5
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 1.3e-15 87.4 151 41.1
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.3e-15 87.4 150 42.0
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 1.8e-15 87.0 152 40.1
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 1.8e-15 87.0 154 43.5
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 1.8e-15 87.0 154 44.2
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 2.3e-15 86.7 152 40.8
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 3.0e-15 86.3 152 39.5
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 3.0e-15 86.3 165 40.0
Dinv31022 Davidia involucrata HOM05D033086 ORTHO05D005796 3.9e-15 85.9 110 50.0
Dinv31080 Davidia involucrata HOM05D033086 ORTHO05D005796 3.9e-15 85.9 110 50.0
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 3.9e-15 85.9 151 41.1
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 6.7e-15 85.1 153 41.2
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 6.7e-15 85.1 152 40.8
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.9e-14 83.6 153 37.3
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.5e-14 83.2 153 39.2
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.5e-14 83.2 153 39.2
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 2.5e-14 83.2 182 36.3
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 2.5e-14 83.2 152 42.1
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 2.5e-14 83.2 152 41.4
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 3.3e-14 82.8 152 40.8
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 4.3e-14 82.4 151 39.1
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 4.3e-14 82.4 145 39.3
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 4.3e-14 82.4 152 39.5
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 5.7e-14 82.0 152 39.5
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 7.4e-14 81.6 154 39.0
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 9.6e-14 81.3 153 39.9
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.3e-13 80.9 157 36.3
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 1.3e-13 80.9 151 35.1
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 2.1e-13 80.1 149 38.3
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 2.8e-13 79.7 155 36.1
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 3.7e-13 79.3 149 39.6
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 3.7e-13 79.3 151 37.1
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.7e-13 79.3 152 38.8
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.7e-13 79.3 186 34.9
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 4.8e-13 79.0 154 40.3
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 6.2e-13 78.6 164 36.0
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 8.2e-13 78.2 151 37.1
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 1.1e-12 77.8 153 36.6
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.1e-12 77.8 152 38.2
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 1.4e-12 77.4 153 39.2
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 4.1e-12 75.9 154 40.3
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 4.1e-12 75.9 151 36.4
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 4.1e-12 75.9 153 35.9
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 5.3e-12 75.5 151 37.1
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 5.3e-12 75.5 151 37.1
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 6.9e-12 75.1 164 35.4
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 9.0e-12 74.7 150 38.0
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 9.0e-12 74.7 151 37.1
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.2e-11 74.3 153 35.9
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.5e-11 73.9 152 38.2
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 4.5e-11 72.4 152 35.5
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 7.6e-11 71.6 160 38.8
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 7.6e-11 71.6 160 38.8
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 1.0e-10 71.2 152 34.9
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 1.0e-10 71.2 152 34.9
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 1.0e-10 71.2 152 34.9
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.0e-10 71.2 153 34.0
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 1.3e-10 70.9 152 34.2
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 1.3e-10 70.9 152 34.2
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 1.3e-10 70.9 161 33.5
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 1.7e-10 70.5 162 34.6
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.7e-10 70.5 162 35.8
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 3.8e-10 69.3 154 35.7
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 6.5e-10 68.6 153 34.6
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 6.5e-10 68.6 154 33.8
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 6.5e-10 68.6 171 32.2
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 8.4e-10 68.2 151 37.1
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 2.5e-09 66.6 161 33.5
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 5.5e-09 65.5 149 37.6
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 2.1e-08 63.5 155 35.5
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 3.5e-08 62.8 151 33.8
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.3e-07 60.8 149 36.9


User provided reference genes

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