Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 5.0e-111 404.4 205 100.0
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 7.6e-91 337.4 183 91.8
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.4e-81 306.6 177 85.9
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.2e-81 305.1 177 85.9
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.1e-81 304.3 177 85.9
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.1e-81 304.3 177 85.9
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.2e-80 303.5 177 84.7
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.1e-80 302.8 177 85.3
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.1e-80 302.8 174 85.6
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.0e-80 301.2 177 84.7
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.8e-79 299.7 177 82.5
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 6.2e-77 291.2 177 81.9
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 8.1e-77 290.8 177 81.4
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 8.1e-77 290.8 177 80.8
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.4e-76 290.0 177 79.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.8e-76 289.7 177 79.7
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.8e-76 289.7 177 81.9
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.9e-76 287.7 177 81.9
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 9.0e-76 287.3 177 81.9
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.5e-75 286.6 177 80.8
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-75 286.2 177 79.7
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-75 286.2 177 79.7
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.0e-75 286.2 177 79.7
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.6e-75 285.8 177 78.5
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 3.4e-75 285.4 177 79.1
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 4.5e-75 285.0 178 78.7
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 4.5e-75 285.0 177 76.8
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.7e-74 283.1 178 78.1
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.9e-74 282.3 177 78.5
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.8e-74 282.0 177 79.1
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 3.8e-74 282.0 177 78.0
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 8.4e-74 280.8 161 87.0
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-73 280.4 178 78.1
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.9e-73 279.6 177 77.4
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.4e-73 279.3 177 78.5
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 3.2e-73 278.9 178 77.0
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 4.2e-73 278.5 178 77.5
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 4.2e-73 278.5 177 78.5
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 4.2e-73 278.5 177 78.5
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 4.2e-73 278.5 177 77.4
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 5.5e-73 278.1 177 78.0
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 7.1e-73 277.7 178 77.5
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 7.1e-73 277.7 177 73.4
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.2e-72 276.9 177 73.4
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.1e-72 276.2 177 76.8
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.1e-72 276.2 177 78.0
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 4.6e-72 275.0 177 75.7
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 6.0e-72 274.6 177 78.5
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 6.0e-72 274.6 177 76.8
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 6.0e-72 274.6 177 76.8
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 7.9e-72 274.2 177 75.7
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.9e-72 274.2 177 72.3
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.0e-71 273.9 178 75.8
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.3e-71 273.5 161 87.0
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.3e-71 273.5 177 75.7
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 2.3e-71 272.7 177 76.3
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.3e-71 272.7 177 77.4
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 3.9e-71 271.9 177 75.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 6.7e-71 271.2 173 77.5
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 8.7e-71 270.8 177 78.5
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 8.7e-71 270.8 177 75.1
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.1e-70 270.4 177 75.1
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.5e-70 270.0 177 75.7
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.9e-70 269.6 184 72.3
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.9e-70 269.6 204 68.1
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 4.3e-70 268.5 173 76.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.4e-70 267.7 204 68.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 7.4e-70 267.7 177 75.1
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 9.6e-70 267.3 177 73.4
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 9.6e-70 267.3 177 76.3
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.3e-69 266.9 177 76.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.6e-69 266.5 172 75.6
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.1e-69 266.2 177 74.6
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 3.7e-69 265.4 173 78.0
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 4.8e-69 265.0 172 75.0
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 6.2e-69 264.6 177 74.6
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.1e-68 263.8 177 74.6
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.8e-68 263.1 158 84.2
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.4e-68 262.7 177 71.8
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.4e-68 262.7 177 75.7
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 3.1e-68 262.3 177 73.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.3e-68 261.5 172 74.4
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 4.5e-67 258.5 178 71.3
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.0e-66 257.3 163 77.9
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.0e-66 257.3 177 75.1
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.0e-66 257.3 177 74.6
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 1.3e-66 256.9 177 74.0
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.3e-66 256.9 177 72.9
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.9e-66 255.8 180 72.2
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.9e-66 255.8 177 73.4
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 4.9e-66 255.0 177 71.8
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 8.4e-66 254.2 177 73.4
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 8.4e-66 254.2 177 72.9
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 8.4e-66 254.2 177 72.9
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-65 253.8 177 72.9
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.1e-65 253.8 177 72.9
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.1e-65 253.8 177 72.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 1.1e-65 253.8 177 71.8
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.1e-65 253.8 177 73.4
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.4e-65 253.4 179 70.4
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.4e-65 253.4 180 71.7
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.4e-65 253.4 180 71.7
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.4e-65 253.4 178 70.2
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.5e-65 252.7 177 72.9
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 7.1e-65 251.1 177 72.3
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 7.1e-65 251.1 177 71.8
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 2.1e-64 249.6 177 67.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 3.5e-64 248.8 177 71.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.0e-64 248.1 177 73.4
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.0e-63 247.3 177 73.4
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.0e-63 247.3 179 71.5
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 1.8e-63 246.5 177 72.9
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.3e-63 246.1 177 72.9
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 6.7e-63 244.6 179 70.9
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.1e-62 243.8 178 70.8
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.1e-61 239.6 177 67.8
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.4e-60 236.9 177 67.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.2e-59 233.8 177 67.2
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-58 230.3 157 72.6
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.3e-58 230.3 157 72.6
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 1.7e-58 229.9 173 67.1
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.7e-58 229.9 177 64.4
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 7.9e-56 221.1 177 63.3
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 6.7e-55 218.0 177 62.7
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.7e-50 203.4 131 74.8
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-49 200.7 156 69.9
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 5.5e-49 198.4 170 57.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 4.6e-48 195.3 170 56.5
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 2.3e-47 193.0 179 60.3
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.2e-45 186.4 161 61.5
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 8.2e-45 184.5 167 54.5
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 9.1e-44 181.0 178 56.7
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 2.5e-41 172.9 177 57.1
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.5e-38 163.7 177 50.8
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.0e-35 153.3 167 48.5
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 5.5e-33 145.2 156 57.1
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 9.4e-33 144.4 86 81.4
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.7e-32 142.9 88 77.3
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 6.7e-31 138.3 90 74.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 4.8e-29 132.1 159 44.7
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 2.0e-27 126.7 72 81.9
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.5e-22 110.5 70 75.7
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 9.8e-22 107.8 175 35.4
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.2e-21 106.7 177 41.2
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.1e-20 104.4 199 37.2
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.8e-20 103.6 67 77.6
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.6e-19 100.5 153 38.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 5.0e-18 95.5 66 65.2
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.5e-17 94.0 178 35.4
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 4.7e-16 89.0 66 63.6
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 2.8e-13 79.7 103 41.7
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 8.3e-13 78.2 62 61.3
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.8e-12 77.0 113 45.1
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.0e-07 61.2 79 44.3
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 3.4e-06 56.2 55 54.5
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 3.4e-06 56.2 55 54.5


User provided reference genes

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