Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 5.3e-226 787.3 391 100.0
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 3.8e-131 472.2 239 97.5
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 3.1e-85 319.7 216 77.8
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 2.5e-66 256.9 231 60.2
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.3e-54 215.7 221 52.9
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.1e-53 214.9 223 52.5
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.8e-51 206.5 231 51.9
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 6.8e-48 195.7 220 51.8
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 5.7e-47 192.6 222 50.5
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.3e-46 191.4 227 47.1
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.5e-44 183.3 218 47.7
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 3.0e-43 180.3 138 68.8
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 3.0e-43 180.3 138 68.8
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.9e-43 179.9 230 45.2
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 3.3e-42 176.8 238 44.1
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.6e-41 174.5 226 46.0
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.1e-41 174.1 218 44.0
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 2.8e-41 173.7 240 42.9
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.8e-41 173.7 218 44.0
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 2.8e-41 173.7 224 45.1
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.8e-41 173.7 215 48.4
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 3.6e-41 173.3 233 44.2
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 4.7e-41 172.9 216 45.4
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 6.2e-41 172.6 215 46.0
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 4.0e-40 169.9 231 42.4
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 4.0e-40 169.9 218 45.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 8.9e-40 168.7 223 45.7
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.2e-39 168.3 291 38.1
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 2.0e-39 167.5 97 84.5
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 7.5e-39 165.6 227 43.6
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 7.5e-39 165.6 233 45.1
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 9.8e-39 165.2 236 39.8
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 6.4e-38 162.5 219 47.5
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 8.3e-38 162.2 217 41.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 3.2e-37 160.2 217 41.5
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 7.0e-37 159.1 218 45.0
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.2e-36 158.3 232 42.2
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.0e-36 157.5 220 45.5
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.0e-36 157.5 218 45.0
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.7e-36 157.1 219 44.7
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 3.5e-36 156.8 230 40.0
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.3e-35 154.1 217 45.6
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 3.0e-35 153.7 224 43.8
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 5.0e-35 152.9 224 39.3
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 6.6e-35 152.5 199 45.7
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 6.6e-35 152.5 199 45.7
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 6.6e-35 152.5 223 40.4
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 8.6e-35 152.1 187 47.6
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.1e-34 151.8 165 48.5
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.5e-34 151.4 217 44.7
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 7.3e-34 149.1 257 39.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 9.5e-34 148.7 225 44.0
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.6e-33 147.9 237 38.4
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 2.8e-33 147.1 213 42.3
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.1e-32 145.2 241 36.9
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.4e-32 144.8 214 41.6
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.8e-32 144.4 217 41.9
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 4.0e-32 143.3 223 39.9
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 5.2e-32 142.9 223 39.9
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 5.2e-32 142.9 223 39.9
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.2e-31 141.7 234 37.6
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.2e-31 141.7 214 40.7
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.2e-31 141.7 214 40.2
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.0e-31 141.0 214 40.7
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.0e-31 141.0 214 40.7
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.6e-31 140.6 224 41.1
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.6e-31 140.6 222 39.2
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 3.4e-31 140.2 223 39.0
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-31 140.2 220 42.3
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.4e-31 140.2 214 41.1
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 4.4e-31 139.8 89 74.2
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 4.4e-31 139.8 214 38.8
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 5.8e-31 139.4 241 37.8
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 5.8e-31 139.4 234 38.5
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.5e-31 139.0 247 40.1
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 9.8e-31 138.7 209 40.7
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.3e-30 138.3 214 41.1
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 2.2e-30 137.5 190 42.6
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 6.4e-30 136.0 214 39.3
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 6.4e-30 136.0 225 40.9
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 8.3e-30 135.6 217 40.6
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 8.3e-30 135.6 235 37.9
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-29 135.2 214 39.7
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-29 134.0 219 40.6
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 3.2e-29 133.7 209 40.7
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.6e-28 131.3 196 41.8
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.6e-28 131.3 181 45.3
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 2.1e-28 131.0 246 38.2
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 2.7e-28 130.6 232 38.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.7e-28 130.6 164 46.3
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.3e-27 127.5 216 38.9
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.0e-27 127.1 216 38.4
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 5.1e-27 126.3 218 37.2
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.6e-27 125.9 216 38.4
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.5e-26 124.0 216 40.3
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.3e-26 123.6 215 39.5
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.2e-25 121.7 216 37.5
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 3.6e-25 120.2 238 35.3
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 4.7e-25 119.8 220 36.8
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 8.1e-25 119.0 221 36.7
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.3e-24 117.5 219 34.7
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 3.1e-24 117.1 220 36.8
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.9e-24 115.5 223 38.1
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 2.6e-23 114.0 209 36.8
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.6e-23 114.0 209 36.8
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 3.4e-23 113.6 235 33.2
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.4e-23 113.2 205 37.1
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 7.6e-23 112.5 215 37.2
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 9.9e-23 112.1 160 45.0
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 1.3e-22 111.7 219 37.4
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.7e-22 111.3 209 37.3
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.2e-22 110.9 209 36.4
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-21 108.6 177 42.4
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.4e-21 108.2 223 34.1
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.7e-20 104.0 162 43.2
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 7.8e-20 102.4 208 34.1
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.3e-19 100.9 358 26.5
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 3.9e-19 100.1 136 44.1
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.9e-18 97.8 186 38.7
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.2e-17 92.8 164 37.2
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 8.1e-17 92.4 236 32.2
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 8.1e-17 92.4 193 35.2
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.4e-16 90.9 220 31.8
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.2e-15 88.6 175 36.0
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 2.2e-14 84.3 211 32.2
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.2e-12 78.6 136 38.2
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 4.6e-12 76.6 235 32.3
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.3e-11 75.1 156 32.1
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 5.1e-11 73.2 116 38.8
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.9e-10 71.2 152 35.5
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.6e-10 69.7 68 52.9
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.6e-09 67.0 69 50.7
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 3.6e-09 67.0 89 38.2
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.8e-08 64.7 176 27.8
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-08 64.7 69 47.8
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.4e-08 64.3 78 46.2


User provided reference genes

Program Settings