Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 6.2e-114 414.1 199 100.0
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 2.6e-88 328.9 192 83.3
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 2.2e-87 325.9 209 79.4
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 5.5e-86 321.2 207 78.7
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 4.0e-81 305.1 205 78.5
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 4.0e-81 305.1 204 76.5
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 3.9e-76 288.5 214 70.6
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.3e-74 283.5 180 78.3
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 2.6e-72 275.8 213 69.0
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 1.4e-70 270.0 216 64.4
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 1.6e-69 266.5 207 66.7
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 2.7e-69 265.8 211 66.8
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.1e-69 264.6 208 65.4
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 5.1e-68 261.5 207 64.7
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 7.4e-67 257.7 207 66.2
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 9.7e-67 257.3 211 64.5
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 6.3e-66 254.6 214 62.1
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 2.6e-64 249.2 208 63.5
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 1.7e-63 246.5 207 62.3
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.1e-62 243.8 201 62.2
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 3.2e-62 242.3 194 63.4
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 4.2e-62 241.9 208 63.0
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 5.5e-62 241.5 241 55.2
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 9.4e-62 240.7 171 68.4
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 1.6e-61 240.0 203 62.6
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 2.7e-61 239.2 207 59.9
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 1.0e-60 237.3 195 64.6
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 3.0e-60 235.7 199 59.8
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 5.1e-60 235.0 198 61.6
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 8.8e-60 234.2 198 62.1
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 1.5e-59 233.4 205 59.5
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 4.4e-59 231.9 202 60.4
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 4.4e-59 231.9 192 59.9
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 1.3e-58 230.3 210 59.5
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.3e-58 228.0 191 58.1
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.3e-58 228.0 191 58.1
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 6.3e-58 228.0 191 58.1
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 4.1e-57 225.3 205 61.0
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 4.1e-57 225.3 211 59.2
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 5.3e-57 224.9 200 59.0
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 1.5e-56 223.4 187 62.6
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 2.0e-56 223.0 192 57.3
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 4.5e-56 221.9 199 59.8
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 1.0e-55 220.7 168 61.9
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 1.4e-54 216.9 213 57.3
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 1.4e-54 216.9 143 73.4
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 1.4e-54 216.9 143 73.4
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 3.2e-54 215.7 186 59.1
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 2.1e-53 213.0 211 57.3
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 4.7e-53 211.8 208 56.7
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 7.9e-53 211.1 212 57.1
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 7.9e-53 211.1 199 55.8
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 2.6e-51 206.1 207 54.6
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 3.3e-51 205.7 207 55.1
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 9.7e-51 204.1 212 52.8
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 1.7e-50 203.4 215 54.9
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 1.7e-50 203.4 206 54.4
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 2.2e-50 203.0 183 56.8
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 4.8e-50 201.8 202 56.4
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 8.2e-50 201.1 180 60.6
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 1.1e-49 200.7 96 93.8
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 3.1e-49 199.1 181 58.6
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 3.1e-49 199.1 181 58.6
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 7.0e-49 198.0 199 55.3
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 1.2e-48 197.2 181 58.6
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 1.2e-48 197.2 181 58.6
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 1.6e-48 196.8 202 54.0
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 2.6e-48 196.1 182 56.6
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 5.9e-48 194.9 176 59.1
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 5.9e-48 194.9 215 53.5
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.0e-47 194.1 191 53.9
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 1.3e-47 193.7 172 54.7
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 2.9e-47 192.6 181 58.0
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 2.9e-47 192.6 146 64.4
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.8e-47 192.2 125 71.2
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 5.0e-47 191.8 181 59.1
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 5.0e-47 191.8 186 58.1
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 6.5e-47 191.4 182 56.6
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 1.1e-46 190.7 177 56.5
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 1.5e-46 190.3 183 55.2
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 2.5e-46 189.5 180 56.7
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.2e-46 188.7 183 57.4
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.4e-46 187.6 161 59.6
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 9.4e-46 187.6 193 53.4
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 2.7e-45 186.0 178 55.6
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 1.4e-44 183.7 175 53.7
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 4.0e-44 182.2 99 79.8
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 6.7e-44 181.4 111 70.3
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 8.8e-44 181.0 203 48.8
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 7.5e-43 177.9 198 49.5
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.1e-41 174.1 112 70.5
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.8e-41 173.3 155 60.6
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 2.4e-41 172.9 196 51.0
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.0e-39 167.5 136 62.5
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.0e-39 167.5 154 57.1
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 2.5e-38 162.9 202 44.1
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 3.2e-38 162.5 78 91.0
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 4.0e-36 155.6 218 48.2
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 8.3e-34 147.9 107 64.5
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 1.0e-31 141.0 189 42.3
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 2.9e-31 139.4 153 49.0
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 6.8e-28 128.3 105 50.5
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 8.8e-28 127.9 144 52.1
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 5.7e-27 125.2 104 57.7
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.7e-26 123.6 146 44.5
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 6.3e-26 121.7 92 57.6
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 6.3e-26 121.7 140 55.0
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 7.0e-25 118.2 117 50.4
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 2.7e-24 116.3 138 52.9
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 4.5e-24 115.5 121 51.2
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 1.4e-20 104.0 69 66.7
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.3e-18 97.4 74 66.2
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 9.5e-14 81.3 104 47.1
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 2.8e-13 79.7 132 42.4
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 2.0e-08 63.5 85 36.5
SEGI_30369 Sequoiadendron giganteum HOM05D007022 ORTHO05D014789 1.7e-07 60.5 77 44.2


User provided reference genes

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