Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 4194.0 2088 100.0
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 3302.3 2004 83.4
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2739.1 2010 71.0
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2593.5 2027 66.6
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 2521.5 2022 65.4
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2504.6 2024 64.7
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2483.4 2014 64.9
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2422.1 2059 62.2
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 2415.6 2122 61.4
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2355.9 2019 62.5
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2290.8 2030 60.6
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2283.4 2028 61.4
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2273.4 2009 61.4
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2271.5 2016 59.7
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2268.8 2014 60.6
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2267.7 2020 59.8
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2252.2 2009 59.7
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2248.0 2013 60.8
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2247.6 2008 59.6
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2246.1 2012 60.2
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2245.7 2015 58.5
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2243.4 2025 58.9
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2234.9 2027 58.1
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 2201.0 2000 60.5
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2197.2 2010 58.3
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2183.7 2038 58.9
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2174.1 2037 56.8
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2167.9 2015 57.2
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2167.5 2013 58.1
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2162.9 2046 58.1
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 2151.3 2011 57.4
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2149.8 2013 56.3
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2139.0 2043 57.3
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 2117.0 2026 55.8
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2109.3 2036 57.4
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 2107.4 1998 57.0
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 2092.0 2028 55.8
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 2079.7 2021 56.0
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 2079.3 2089 54.5
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2078.9 2032 56.8
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 2077.8 2028 55.7
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 2068.5 2015 55.9
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 2044.6 1934 56.9
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 2013.0 2027 54.7
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 2008.0 2033 54.3
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1980.3 2030 54.0
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1970.7 2019 53.7
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1958.7 1945 55.3
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1954.1 2028 53.2
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1936.0 2070 52.5
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1924.8 2025 52.1
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1918.7 2019 52.0
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1914.8 2046 53.2
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1907.1 2011 52.8
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1905.6 2042 52.9
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1902.9 2010 52.8
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1900.6 2009 53.0
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1886.7 2019 51.4
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1878.6 2017 52.0
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1877.4 2029 51.7
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1872.4 2020 51.7
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1843.2 2025 51.1
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1835.1 1974 52.0
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1818.9 2013 51.3
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1814.3 1949 51.7
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1807.3 2008 50.8
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1806.6 2019 50.8
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1798.5 1963 51.6
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1785.8 2031 50.5
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1777.3 2042 49.7
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1774.2 1755 56.3
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1770.4 2041 48.4
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1757.3 1755 55.7
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1741.1 2157 47.3
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1716.8 2019 49.2
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1715.3 2020 49.0
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1706.0 2020 48.9
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1695.6 2032 48.2
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1673.7 2027 47.7
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1672.9 2023 48.2
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1668.7 2021 48.6
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1661.7 2026 48.1
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1655.6 2020 48.0
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1625.9 2033 47.5
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1623.6 2033 47.5
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1623.2 2034 47.4
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1622.4 2031 47.6
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1619.0 2027 47.4
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1542.3 1816 47.9
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1534.6 1468 57.2
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1515.0 1471 56.5
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1459.1 2102 43.1
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1448.7 1726 48.6
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1428.7 2035 42.8
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1413.3 1753 45.9
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1321.6 1219 57.5
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1216.8 2040 37.5
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1076.6 2135 35.5
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.3e-296 1023.5 1701 39.0
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 3.7e-278 963.0 1493 39.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 1.7e-246 857.8 2164 32.0
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 3.0e-235 820.5 2002 32.1
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 9.4e-221 772.3 2116 30.7
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 5.7e-210 736.5 666 60.8
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.9e-190 671.0 1158 38.9
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 6.8e-171 606.7 1743 29.9
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 3.4e-170 604.4 1233 34.2
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.2e-168 597.8 632 54.9
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 3.5e-151 541.2 1927 26.4
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.7e-150 538.9 442 64.5
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.3e-141 508.1 392 65.3
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 6.7e-134 483.8 350 72.6
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.6e-127 462.6 348 71.6
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.6e-119 436.0 376 57.7
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.3e-118 433.0 274 79.9
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.4e-102 379.8 265 70.9
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.2e-85 323.6 517 40.8
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.8e-83 316.2 261 63.2
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 8.5e-81 307.4 198 73.7
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 7.0e-75 287.7 371 45.8
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.4e-62 246.9 203 62.6
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.5e-61 243.4 235 57.4
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 6.0e-58 231.5 180 66.1
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 1.5e-45 190.3 367 35.7
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.7e-42 179.5 439 33.5
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.6e-34 153.7 83 85.5
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 6.6e-33 148.3 72 100.0
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.6e-31 143.7 72 95.8
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 7.6e-29 134.8 391 27.4
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.9e-28 132.9 274 33.9
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 3.8e-28 132.5 218 37.6
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 4.9e-28 132.1 131 59.5
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 7.1e-27 128.3 64 100.0
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-26 126.3 614 22.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.6e-21 109.8 102 57.8
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 2.2e-20 106.7 68 76.5
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 2.9e-20 106.3 105 51.4
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 9.3e-19 101.3 67 68.7
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-18 100.1 100 47.0
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 3.7e-15 89.4 55 80.0
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.4e-14 87.4 52 78.8
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 5.8e-13 82.0 125 41.6
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 2.3e-09 70.1 53 73.6
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 5.1e-09 68.9 46 69.6


User provided reference genes

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