Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.4e-163 579.7 323 100.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 6.5e-105 384.8 229 97.8
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.8e-99 366.7 229 93.9
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 2.2e-97 359.8 229 92.1
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 3.8e-97 359.0 232 92.2
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.1e-96 357.5 229 91.3
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.1e-96 357.5 229 91.7
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.1e-96 357.5 229 91.7
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 3.2e-96 355.9 230 91.7
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 5.5e-96 355.1 229 90.8
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.5e-96 355.1 230 91.3
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 5.5e-96 355.1 230 91.7
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 5.5e-96 355.1 230 91.7
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 5.5e-96 355.1 230 91.7
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 7.2e-96 354.8 232 90.9
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 1.2e-95 354.0 235 89.8
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.6e-95 353.6 229 91.7
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.6e-95 353.6 229 91.3
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.7e-95 352.8 229 91.3
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 6.1e-95 351.7 229 90.0
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 8.0e-95 351.3 229 90.4
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.0e-94 350.9 229 90.4
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.4e-94 350.5 230 90.0
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.8e-94 350.1 229 90.8
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.8e-94 350.1 226 90.7
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 2.3e-94 349.7 232 89.2
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 6.8e-94 348.2 229 89.5
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.2e-93 347.4 229 90.4
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.2e-93 347.4 228 89.5
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.5e-93 347.1 229 91.7
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 2.0e-93 346.7 228 89.5
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.4e-93 345.9 230 89.1
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.2e-92 343.2 229 90.4
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 3.7e-92 342.4 229 90.0
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.1e-91 340.9 234 85.5
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.4e-91 339.7 229 88.6
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 4.1e-91 339.0 269 79.2
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 5.4e-91 338.6 229 87.8
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 2.0e-90 336.7 229 87.3
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 2.7e-90 336.3 229 87.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 5.9e-90 335.1 229 87.3
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.9e-90 335.1 229 86.5
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 7.7e-90 334.7 229 87.3
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.0e-89 334.3 229 87.3
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.3e-89 334.0 229 87.3
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 2.3e-89 333.2 229 87.3
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.3e-89 333.2 229 86.0
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.9e-89 332.8 229 86.9
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 3.8e-89 332.4 229 86.9
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 3.8e-89 332.4 229 86.9
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 3.8e-89 332.4 229 87.3
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 5.0e-89 332.0 229 85.6
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 5.0e-89 332.0 229 86.5
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.0e-89 332.0 229 86.0
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 5.0e-89 332.0 229 87.8
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 6.5e-89 331.6 229 86.5
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 8.6e-89 331.3 229 86.9
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.1e-88 330.9 236 85.2
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.5e-88 330.5 230 87.0
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.5e-88 330.5 230 87.0
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.5e-88 330.5 229 87.3
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.9e-88 330.1 229 86.5
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.9e-88 330.1 229 86.9
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.9e-88 330.1 229 86.9
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 2.5e-88 329.7 238 83.6
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 2.5e-88 329.7 228 86.8
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 2.5e-88 329.7 227 85.9
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.2e-88 329.3 230 86.5
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 7.2e-88 328.2 229 84.7
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 9.5e-88 327.8 229 85.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.6e-87 327.0 229 85.2
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 2.1e-87 326.6 229 85.6
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.1e-87 326.6 239 82.8
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 2.1e-87 326.6 229 86.0
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 3.6e-87 325.9 228 86.0
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 4.7e-87 325.5 228 86.4
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 4.7e-87 325.5 229 85.2
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 8.0e-87 324.7 229 86.5
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 1.0e-86 324.3 229 84.7
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.4e-86 323.9 229 85.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.4e-86 323.9 229 84.7
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 2.3e-86 323.2 229 84.7
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 3.0e-86 322.8 196 94.9
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 5.2e-86 322.0 229 85.2
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 5.2e-86 322.0 229 84.3
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 8.9e-86 321.2 231 84.8
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 8.9e-86 321.2 226 85.0
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 1.5e-85 320.5 198 93.9
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 4.4e-85 318.9 229 84.3
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 5.7e-85 318.5 228 85.5
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 5.7e-85 318.5 252 78.2
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.7e-85 318.5 231 84.0
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 7.5e-85 318.2 229 83.4
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.3e-84 317.4 229 83.4
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.3e-84 317.4 229 83.4
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-84 317.4 229 82.5
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-84 317.4 229 82.5
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-84 317.4 229 82.5
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.3e-84 317.4 229 83.4
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.3e-84 317.4 229 82.5
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.7e-84 317.0 229 83.0
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.2e-84 316.6 229 83.0
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.8e-84 316.2 229 83.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.8e-84 316.2 229 83.4
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.7e-84 315.8 252 77.8
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.7e-84 315.8 229 85.2
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 4.9e-84 315.5 229 82.5
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 4.9e-84 315.5 229 82.5
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 4.9e-84 315.5 229 82.5
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 4.9e-84 315.5 229 83.0
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.9e-84 315.5 229 82.1
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 6.3e-84 315.1 229 82.5
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 6.3e-84 315.1 229 82.5
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 8.3e-84 314.7 229 82.1
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 8.3e-84 314.7 229 82.1
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 3.1e-83 312.8 229 82.1
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 5.4e-83 312.0 234 81.6
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 7.0e-83 311.6 229 83.0
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 2.3e-81 306.6 230 82.2
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.9e-81 306.2 285 62.1
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 4.3e-80 302.4 229 80.3
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.8e-79 299.7 211 85.3
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 3.6e-79 299.3 179 97.2
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.6e-79 299.3 185 94.1
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.0e-78 297.7 185 93.0
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.4e-78 297.4 210 85.2
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 1.4e-78 297.4 192 90.6
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.2e-78 295.4 184 94.0
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 8.9e-78 294.7 229 78.6
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 3.4e-77 292.7 235 77.9
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.1e-75 287.7 197 87.8
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 4.1e-75 285.8 197 89.3
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 3.5e-74 282.7 185 88.6
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 1.7e-73 280.4 168 97.0
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 9.5e-72 274.6 207 82.1
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 3.6e-71 272.7 197 85.3
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 4.4e-69 265.8 234 70.9
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 7.5e-69 265.0 187 84.0
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 7.5e-69 265.0 184 85.9
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.2e-66 257.7 169 88.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.3e-65 253.4 226 64.2
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 3.0e-65 253.1 230 70.0
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 3.9e-65 252.7 164 89.6
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.6e-63 246.1 180 81.7
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 3.1e-62 243.0 148 98.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.3e-60 237.7 148 91.9
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 7.1e-59 231.9 225 68.9
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 7.8e-58 228.4 178 79.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.7e-57 227.3 224 62.9
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.9e-57 226.1 178 71.3
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.3e-56 223.0 137 96.4
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 6.8e-54 215.3 159 70.4
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.0e-53 213.8 244 55.7
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.6e-53 213.4 166 75.9
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.4e-51 207.6 179 74.3
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.5e-50 203.0 132 94.7
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.0e-50 202.2 138 76.1
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 8.7e-49 198.4 162 75.3
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 5.6e-48 195.7 127 78.0
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 3.1e-46 189.9 161 67.1
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.4e-35 154.5 124 67.7
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 2.3e-33 147.1 127 62.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 9.6e-32 141.7 229 45.4
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.8e-23 113.6 209 40.2
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 3.5e-18 96.7 109 49.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 6.0e-18 95.9 47 97.9
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 5.1e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 2.5e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 2.2e-07 60.8 60 53.3


User provided reference genes

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