Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 0.0e+00 1094.0 547 100.0
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 8.9e-139 498.0 511 56.4
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.0e-115 419.5 490 53.5
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.5e-114 417.5 507 52.7
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.9e-104 384.0 545 44.6
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 3.9e-94 349.7 513 47.0
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 2.6e-93 347.1 510 44.3
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.7e-84 317.8 515 44.5
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.2e-84 317.4 509 44.2
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 2.8e-84 317.0 511 42.9
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.8e-83 314.3 504 43.5
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 6.5e-81 305.8 499 43.7
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 3.3e-77 293.5 497 42.9
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 5.7e-77 292.7 511 41.1
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 9.7e-77 292.0 526 39.9
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 2.0e-74 284.3 508 40.6
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.0e-73 282.0 504 40.3
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.9e-73 280.4 504 40.3
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 6.5e-73 279.3 511 40.3
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 8.5e-73 278.9 515 40.4
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.2e-69 268.5 497 39.0
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.2e-69 268.5 509 39.1
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.3e-68 265.0 510 38.8
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 4.1e-67 260.0 531 37.9
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 2.7e-66 257.3 508 36.6
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.2e-63 248.4 542 35.4
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 6.1e-63 246.1 531 35.8
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 4.1e-59 233.4 516 36.2
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 7.0e-59 232.6 522 37.9
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.1e-56 225.3 513 34.7
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.5e-56 224.2 471 39.5
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 3.6e-55 220.3 519 37.0
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 8.0e-55 219.2 571 32.0
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 2.9e-52 210.7 512 36.9
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 8.3e-52 209.1 510 34.3
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.1e-51 208.8 510 34.7
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 7.3e-48 196.1 504 33.1
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.6e-47 194.9 527 32.6
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 2.8e-47 194.1 512 33.2
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 3.6e-47 193.7 510 32.7
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 1.2e-45 188.7 488 34.0
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.5e-45 188.3 499 31.5
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 6.4e-44 183.0 508 34.1
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 1.4e-43 181.8 518 31.5
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.9e-43 181.4 523 31.0
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.2e-42 178.7 508 34.1
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 2.7e-42 177.6 515 31.5
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 6.0e-42 176.4 508 33.5
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 6.0e-42 176.4 508 33.5
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.3e-41 175.3 519 34.5
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 3.0e-41 174.1 495 33.5
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 3.9e-41 173.7 513 32.2
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 4.3e-40 170.2 497 31.4
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.3e-36 158.7 514 31.5
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 2.2e-36 157.9 494 32.2
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.2e-35 154.1 545 29.2
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.6e-34 151.8 552 27.4
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.9e-32 144.8 514 30.5
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 7.3e-32 142.9 514 29.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 8.1e-31 139.4 447 30.4
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.8e-30 138.3 510 28.2
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 5.2e-30 136.7 509 28.1
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.0e-29 134.8 511 28.8
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.4e-29 134.0 511 28.8
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 4.4e-29 133.7 507 29.0
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 7.6e-29 132.9 481 31.4
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 2.1e-26 124.8 515 28.7
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 2.7e-26 124.4 497 26.8
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 4.6e-26 123.6 142 53.5
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 5.1e-25 120.2 515 28.5
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 6.6e-25 119.8 341 34.9
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.1e-24 119.0 252 36.1
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.2e-23 115.5 514 29.2
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 3.6e-23 114.0 507 25.4
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 3.6e-23 114.0 521 26.9
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.3e-20 105.5 508 25.4
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 4.9e-20 103.6 513 24.6
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 6.4e-20 103.2 359 30.9
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 8.4e-20 102.8 516 24.2
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 7.8e-18 96.3 399 28.1
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.1e-14 85.9 284 29.9
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.4e-14 85.5 345 27.2
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.1e-14 84.3 284 29.9
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 2.0e-13 81.6 574 24.4
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 2.6e-13 81.3 278 29.9
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.7e-12 78.6 201 35.3
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.2e-12 78.2 187 35.3
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 3.0e-09 67.8 131 42.7
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.9e-08 65.1 99 42.4
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.1e-06 59.3 192 31.2
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.4e-06 58.2 126 41.3
ATR0568G035 Amborella trichopoda HOM05D007001 ORTHO05D005587 6.9e-06 56.6 226 28.8


User provided reference genes

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