Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.3e-149 533.1 276 100.0
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.4e-118 428.3 277 80.9
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.1e-116 421.8 279 79.9
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 2.7e-115 419.1 278 80.2
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 5.0e-114 414.8 278 79.5
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 9.5e-113 410.6 276 79.0
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.6e-112 409.8 261 83.5
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 2.8e-112 409.1 276 78.6
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.8e-111 406.4 278 77.3
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 4.0e-111 405.2 277 76.5
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 6.8e-111 404.4 249 84.7
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 8.9e-111 404.1 279 77.1
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 8.9e-111 404.1 272 78.7
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 7.5e-110 401.0 278 77.3
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 1.7e-109 399.8 277 75.5
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 3.7e-109 398.7 278 74.5
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 6.0e-107 391.3 280 75.0
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 6.0e-107 391.3 276 75.4
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.3e-106 390.2 276 74.3
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 5.0e-106 388.3 277 74.4
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 8.6e-106 387.5 279 74.2
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 3.3e-105 385.6 278 73.7
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 4.3e-105 385.2 279 72.8
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 7.3e-105 384.4 278 73.7
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.2e-104 383.6 276 72.8
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.2e-104 383.6 258 78.3
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 4.7e-104 381.7 283 72.1
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 6.2e-104 381.3 313 69.0
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.8e-103 379.8 276 71.7
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 2.6e-102 375.9 250 77.2
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 5.8e-102 374.8 279 71.3
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 9.8e-102 374.0 249 78.7
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 3.7e-101 372.1 288 70.5
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 6.4e-101 371.3 250 75.2
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 2.4e-100 369.4 278 71.9
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 4.1e-100 368.6 279 71.3
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.4e-100 368.2 330 63.0
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 7.0e-100 367.9 269 74.3
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 7.0e-100 367.9 248 75.8
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.2e-99 367.1 275 69.1
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 7.8e-99 364.4 265 70.9
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 7.8e-99 364.4 250 73.6
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.7e-98 363.2 250 75.2
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 2.3e-98 362.8 250 75.2
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 5.0e-98 361.7 277 69.3
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 8.6e-98 360.9 307 66.1
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.5e-97 360.1 277 66.8
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.5e-97 360.1 278 68.0
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.9e-97 359.8 250 73.2
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 2.5e-97 359.4 250 74.4
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 4.3e-97 358.6 263 69.6
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 4.3e-97 358.6 263 71.5
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 9.5e-97 357.5 277 66.1
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.2e-96 357.1 250 72.4
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.3e-95 352.8 279 68.5
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 3.1e-95 352.4 250 72.4
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.5e-94 350.1 263 68.8
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 9.9e-94 347.4 251 71.7
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.2e-93 346.3 267 68.5
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 2.9e-93 345.9 279 66.3
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 3.7e-93 345.5 278 66.2
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 3.7e-93 345.5 263 69.6
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 8.3e-93 344.4 249 71.9
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.4e-92 343.6 286 66.4
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 4.1e-92 342.0 300 65.0
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 4.1e-92 342.0 315 61.9
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-91 340.1 252 70.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 3.5e-91 339.0 253 70.4
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.5e-91 339.0 257 72.8
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 1.0e-90 337.4 248 70.2
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 5.1e-90 335.1 275 66.2
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 8.6e-90 334.3 250 68.4
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.5e-89 333.6 278 68.0
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 2.5e-89 332.8 279 66.3
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 3.3e-89 332.4 227 74.9
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 2.1e-88 329.7 263 68.1
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 2.4e-87 326.2 236 74.6
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 2.0e-86 323.2 249 71.5
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.4e-84 317.0 250 64.0
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.2e-83 313.9 224 71.9
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.6e-83 313.5 270 66.3
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.8e-83 311.2 264 64.0
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.3e-82 310.5 264 63.6
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.7e-82 310.1 284 63.0
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 3.9e-82 308.9 220 76.8
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.1e-82 308.5 264 63.6
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 4.3e-81 305.4 277 62.1
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.2e-80 303.9 265 63.8
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 4.7e-80 302.0 221 73.3
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.2e-75 287.3 276 62.3
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 4.6e-75 285.4 299 54.8
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.4e-68 263.8 167 82.6
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 6.2e-64 248.4 267 49.4
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 2.4e-63 246.5 257 52.5
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 4.2e-60 235.7 160 71.2
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 7.1e-60 235.0 164 76.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.7e-59 233.0 245 52.2
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.8e-58 230.3 262 53.4
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.5e-57 227.3 251 51.0
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.3e-57 225.7 247 51.4
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.9e-52 210.3 247 49.8
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 7.1e-52 208.4 200 59.0
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-51 207.6 174 64.9
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.9e-50 202.6 232 52.6
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.9e-50 202.6 155 69.0
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.2e-44 183.0 114 82.5
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 2.5e-36 156.8 183 50.8
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 2.6e-33 146.7 207 45.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 3.3e-33 146.4 186 48.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 4.4e-33 146.0 209 45.5
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.3e-32 144.4 207 45.9
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 3.7e-32 142.9 104 68.3
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.8e-31 140.6 104 71.2
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 4.1e-31 139.4 116 65.5
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.1e-28 131.3 186 46.8
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.0e-26 124.8 79 83.5
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 1.5e-25 120.9 80 77.5
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 7.4e-25 118.6 207 42.0
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 3.1e-23 113.2 102 61.8
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 3.1e-23 113.2 70 81.4
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 5.3e-23 112.5 89 66.3
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 2.6e-22 110.2 60 88.3
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 1.8e-18 97.4 219 29.7
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 6.7e-18 95.5 140 45.0
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 4.8e-16 89.4 247 28.3
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 8.3e-16 88.6 128 40.6
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.4e-15 87.0 64 70.3
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 4.5e-14 82.8 43 86.0
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.3e-13 81.3 218 29.4
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 8.5e-13 78.6 61 59.0
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 1.5e-09 67.8 35 91.4
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 9.8e-09 65.1 61 62.3
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 2.8e-08 63.5 39 79.5
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 4.8e-08 62.8 39 71.8
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 6.3e-08 62.4 39 79.5
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 9.1e-07 58.5 61 59.0
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.7e-06 57.0 142 36.6


User provided reference genes

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