Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 7.3e-48 194.9 247 100.0
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 4.0e-38 162.5 248 92.3
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 8.1e-31 138.3 252 82.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 6.9e-30 135.2 255 78.4
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 8.4e-28 128.3 254 84.3
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.9e-27 127.1 255 82.4
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.9e-27 127.1 243 87.7
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 3.2e-27 126.3 248 84.7
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 3.2e-27 126.3 249 83.1
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.2e-27 125.9 249 83.9
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.2e-26 124.4 253 83.4
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.2e-26 124.4 253 82.2
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 2.7e-26 123.2 244 82.0
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.7e-26 123.2 251 76.1
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 6.0e-26 122.1 264 78.8
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 7.9e-26 121.7 256 76.6
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 7.9e-26 121.7 245 79.6
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.0e-25 121.3 246 79.3
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.3e-25 120.9 247 78.9
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.1e-25 119.0 237 85.2
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 5.1e-25 119.0 260 80.8
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.1e-24 117.9 247 81.4
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.1e-24 117.9 234 81.2
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.9e-24 117.1 254 77.2
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 3.3e-24 116.3 234 85.0
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 3.3e-24 116.3 257 79.8
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 3.3e-24 116.3 257 77.4
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 7.4e-24 115.2 251 80.1
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 9.6e-24 114.8 261 75.9
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.1e-23 113.6 233 74.7
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 2.8e-23 113.2 260 74.2
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 2.8e-23 113.2 263 74.5
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 3.7e-23 112.8 259 74.5
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 4.8e-23 112.5 255 78.0
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 4.8e-23 112.5 261 75.1
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 6.2e-23 112.1 264 74.2
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 6.2e-23 112.1 265 74.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 8.1e-23 111.7 250 73.2
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.1e-22 111.3 255 76.1
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.1e-22 111.3 255 76.1
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.8e-22 110.5 261 74.7
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.8e-22 110.5 261 74.7
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.8e-22 110.5 265 66.4
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.8e-22 110.5 263 73.4
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 3.1e-22 109.8 251 79.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 5.3e-22 109.0 260 82.3
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.2e-21 107.8 261 73.6
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.5e-21 107.5 245 75.9
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.3e-20 104.4 259 74.9
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 2.9e-20 103.2 63 81.0
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.9e-20 102.4 259 74.1
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 8.4e-20 101.7 255 74.5
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.4e-19 100.9 258 76.4
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 7.1e-19 98.6 253 75.1
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 2.1e-18 97.1 261 72.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 2.7e-18 96.7 262 71.8
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 4.6e-18 95.9 264 70.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 6.0e-18 95.5 262 71.4
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.0e-17 94.7 273 74.4
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 1.8e-17 94.0 51 84.3
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 2.3e-17 93.6 215 87.4
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.3e-17 93.6 187 86.1
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 3.0e-17 93.2 261 71.3
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.9e-17 92.8 267 76.0
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 5.1e-17 92.4 262 77.9
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 4.3e-16 89.4 258 72.1
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.7e-16 89.0 227 84.6
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.4e-16 88.6 266 76.7
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.4e-16 88.6 266 75.6
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.3e-15 87.8 268 75.0
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 2.1e-15 87.0 58 77.6
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.1e-15 87.0 180 86.1
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 6.3e-15 85.5 67 65.7
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 6.3e-15 85.5 262 63.0
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.8e-14 84.0 48 75.0
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.8e-14 84.0 179 87.2
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.8e-14 84.0 64 65.6
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 2.4e-14 83.6 210 87.1
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 2.4e-14 83.6 65 67.7
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.1e-14 82.8 271 73.8
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.5e-13 80.9 47 72.3
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 3.4e-13 79.7 54 68.5
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.4e-13 79.7 54 68.5
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 3.4e-13 79.7 54 68.5
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 5.9e-13 79.0 48 70.8
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.0e-12 78.2 63 65.1
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.2e-12 77.0 62 66.1
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 2.9e-12 76.6 71 60.6
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 5.0e-12 75.9 55 63.6
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 6.5e-12 75.5 57 66.7
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.5e-12 75.5 63 63.5
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 8.4e-12 75.1 55 67.3
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 8.4e-12 75.1 46 73.9
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.1e-11 74.7 48 68.8
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.5e-11 73.6 50 68.0
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 2.5e-11 73.6 50 68.0
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.5e-11 73.6 79 51.9
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 3.2e-11 73.2 57 64.9
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.5e-11 72.4 44 68.2
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 9.3e-11 71.6 48 64.6
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.3e-11 71.6 48 64.6
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.2e-10 71.2 47 68.1
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.2e-10 71.2 47 68.1
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.2e-10 71.2 209 87.1
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 2.1e-10 70.5 235 73.2
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 2.1e-10 70.5 46 69.6
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 3.5e-10 69.7 54 61.1
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 6.1e-10 68.9 48 64.6
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 7.9e-10 68.6 50 62.0
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.8e-09 67.4 63 58.7
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 3.9e-09 66.2 45 68.9
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 3.9e-09 66.2 54 53.7
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 8.7e-09 65.1 49 63.3
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 8.7e-09 65.1 45 68.9
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.1e-08 64.7 64 56.2
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.1e-08 64.7 269 56.5
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.5e-08 64.3 64 57.8
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.5e-08 63.5 61 55.7
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 4.3e-08 62.8 58 50.0
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 2.2e-07 60.5 39 79.5
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 2.2e-07 60.5 55 54.5
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 2.2e-07 60.5 55 54.5
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 4.8e-07 59.3 64 57.8
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.1e-06 58.2 59 54.2
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 1.4e-06 57.8 63 49.2
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.8e-06 57.4 63 50.8
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.1e-06 56.6 56 53.6
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 4.1e-06 56.2 147 69.4
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 5.3e-06 55.8 67 49.3
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 6.9e-06 55.5 68 50.0
ATR0998G002 Amborella trichopoda HOM05D004463 ORTHO05D004724 9.0e-06 55.1 214 80.4
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.0e-06 55.1 59 54.2
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 9.0e-06 55.1 42 64.3


User provided reference genes

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