Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.5e-55 219.2 105 100.0
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 4.2e-45 184.5 99 85.9
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.4e-45 183.3 96 88.5
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.4e-45 183.3 96 88.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 9.4e-45 183.3 96 88.5
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 3.6e-44 181.4 96 88.5
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 4.6e-44 181.0 96 87.5
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 6.1e-44 180.6 97 86.6
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 7.9e-44 180.3 97 86.6
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 1.4e-43 179.5 97 86.6
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.4e-43 179.5 98 83.7
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.8e-43 179.1 97 86.6
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.8e-43 179.1 96 86.5
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 3.0e-43 178.3 95 87.4
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 3.0e-43 178.3 95 87.4
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 3.0e-43 178.3 99 83.8
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 3.0e-43 178.3 95 87.4
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.1e-43 177.6 97 85.6
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 5.1e-43 177.6 96 86.5
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.1e-43 177.6 96 85.4
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.1e-43 177.6 96 85.4
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 5.1e-43 177.6 96 86.5
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 5.1e-43 177.6 97 85.6
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 6.7e-43 177.2 96 85.4
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 1.1e-42 176.4 95 86.3
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 1.1e-42 176.4 96 85.4
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.5e-42 176.0 96 87.5
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.0e-42 175.6 96 84.4
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 2.0e-42 175.6 97 84.5
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 2.5e-42 175.3 97 84.5
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 3.3e-42 174.9 98 81.6
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 3.3e-42 174.9 93 87.1
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 3.3e-42 174.9 95 85.3
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 3.3e-42 174.9 98 80.6
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 4.3e-42 174.5 99 81.8
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 4.3e-42 174.5 96 86.5
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 4.3e-42 174.5 96 82.3
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 5.7e-42 174.1 99 81.8
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 5.7e-42 174.1 96 85.4
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 7.4e-42 173.7 99 80.8
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.7e-42 173.3 96 82.3
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.7e-42 173.3 96 82.3
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 9.7e-42 173.3 98 80.6
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 9.7e-42 173.3 98 82.7
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.3e-41 172.9 98 86.7
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.3e-41 172.9 99 80.8
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.3e-41 172.9 96 83.3
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.7e-41 172.6 95 84.2
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.7e-41 172.6 95 84.2
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.2e-41 172.2 96 81.2
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 2.8e-41 171.8 96 81.2
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.8e-41 171.8 96 81.2
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.8e-41 171.8 96 81.2
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.8e-41 171.8 96 83.3
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.8e-41 171.8 96 83.3
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 2.8e-41 171.8 96 80.2
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.7e-41 171.4 96 82.3
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.7e-41 171.4 96 83.3
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 4.8e-41 171.0 98 81.6
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 6.3e-41 170.6 92 85.9
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 6.3e-41 170.6 98 80.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 8.2e-41 170.2 95 83.2
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 8.2e-41 170.2 96 81.2
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 8.2e-41 170.2 92 84.8
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.1e-40 169.9 98 79.6
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.1e-40 169.9 96 80.2
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.4e-40 169.5 93 83.9
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.4e-40 169.5 118 71.2
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.4e-40 169.5 96 80.2
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.4e-40 169.5 96 82.3
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.8e-40 169.1 98 80.6
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.8e-40 169.1 96 82.3
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.4e-40 168.7 98 78.6
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 3.1e-40 168.3 95 82.1
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 3.1e-40 168.3 96 81.2
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 3.1e-40 168.3 96 81.2
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 4.1e-40 167.9 95 81.1
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 9.1e-40 166.8 98 78.6
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 9.1e-40 166.8 98 78.6
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 9.1e-40 166.8 98 78.6
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 1.2e-39 166.4 98 78.6
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 1.2e-39 166.4 95 82.1
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.2e-39 166.4 99 77.8
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.2e-39 166.4 98 76.5
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.0e-39 165.6 98 77.6
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.0e-39 165.6 96 80.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.6e-39 165.2 96 80.2
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 2.6e-39 165.2 96 80.2
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 2.6e-39 165.2 96 80.2
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 2.6e-39 165.2 96 80.2
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 2.6e-39 165.2 96 80.2
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 4.5e-39 164.5 96 78.1
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 4.5e-39 164.5 95 78.9
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 5.9e-39 164.1 98 76.5
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 5.9e-39 164.1 95 81.1
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 7.7e-39 163.7 96 79.2
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 7.7e-39 163.7 96 79.2
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 7.7e-39 163.7 95 80.0
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 7.7e-39 163.7 93 79.6
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 7.7e-39 163.7 98 77.6
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.0e-38 163.3 96 79.2
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.0e-38 163.3 96 79.2
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.0e-38 163.3 96 79.2
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.7e-38 162.5 96 78.1
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.7e-38 162.5 96 78.1
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.7e-38 162.5 96 78.1
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.7e-38 162.5 96 78.1
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.7e-38 162.5 96 78.1
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.7e-38 162.5 96 78.1
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 2.2e-38 162.2 118 67.8
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 3.8e-38 161.4 96 78.1
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 5.0e-38 161.0 100 77.0
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 5.0e-38 161.0 96 78.1
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 6.5e-38 160.6 96 76.0
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.1e-37 159.8 96 75.0
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.5e-37 158.7 98 72.4
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.6e-36 156.0 87 85.1
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 3.3e-34 148.3 95 72.6
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.3e-33 146.4 159 50.9
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 2.2e-33 145.6 131 58.0
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 7.7e-31 137.1 98 62.2
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 6.5e-30 134.0 81 76.5
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 3.0e-27 125.2 95 60.0
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.8e-27 123.6 93 67.7
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.1e-26 123.2 102 66.7
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.5e-26 122.9 95 61.1
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 2.0e-23 112.5 90 57.8
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.1e-21 106.7 82 64.6
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.1e-20 102.4 98 54.1
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 2.1e-20 102.4 96 51.0
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 2.7e-20 102.1 93 51.6
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-20 101.3 95 52.6
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.4e-19 99.8 96 54.2
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 5.7e-18 94.4 57 80.7
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.8e-17 92.0 55 81.8
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 2.8e-17 92.0 138 43.5
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.8e-16 89.4 52 84.6
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 4.1e-16 88.2 106 46.2
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 3.5e-15 85.1 81 51.9
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 4.5e-15 84.7 42 85.7
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.5e-15 84.7 41 87.8
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.1e-13 80.1 42 81.0
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 5.5e-13 77.8 55 65.5
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 6.1e-12 74.3 54 68.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.0e-11 73.6 41 78.0
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-10 70.1 46 67.4
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 3.7e-09 65.1 93 37.6
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 3.5e-07 58.5 83 47.0


User provided reference genes

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