Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 4019.5 2044 100.0
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 3690.6 1872 99.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2797.7 1894 75.2
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2783.4 1980 73.1
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2744.5 1916 73.2
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2710.3 1955 71.4
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2703.3 1956 71.5
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2689.8 2026 69.2
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2660.6 1935 71.5
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2611.6 1944 69.3
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2605.5 2017 67.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2590.5 1966 68.6
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2568.1 1949 68.8
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2567.0 1960 69.0
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2567.0 1913 69.4
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2559.6 1943 67.3
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2535.8 1964 67.5
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2533.1 1953 67.8
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2521.5 1955 68.2
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2515.7 1944 67.7
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2513.8 1917 68.6
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2502.6 1956 66.2
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2495.3 1965 67.0
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2478.4 1954 65.8
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2478.0 1959 66.4
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2477.2 1919 67.1
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2460.6 1951 65.5
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2452.9 1943 66.0
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2428.7 1953 64.6
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2404.0 1938 65.1
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2400.5 1948 64.4
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2388.6 1955 63.9
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2386.3 1949 63.7
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2381.7 1906 65.8
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2374.7 1955 64.0
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2374.0 1926 64.1
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2373.6 1957 63.6
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2372.8 1939 63.2
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2360.1 1951 63.6
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2353.6 1945 63.2
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2349.3 1960 63.7
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2347.4 1988 62.1
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2347.0 1949 63.0
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2345.5 1920 63.8
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2341.6 1943 63.4
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2323.9 1986 62.4
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2312.7 2032 61.4
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2312.7 1928 63.0
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2312.0 1956 62.2
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2283.4 1950 62.8
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2281.1 1936 62.9
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2280.0 2024 61.3
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2279.6 1949 61.8
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2278.4 1933 64.4
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2260.0 1970 60.9
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2254.2 1783 66.2
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2251.9 1947 61.9
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2249.9 1948 61.8
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2245.3 1966 61.6
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2237.6 2091 58.5
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2232.6 1957 61.2
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2228.4 1973 60.3
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2223.0 1974 60.7
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2175.6 1928 60.8
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2161.7 1951 58.9
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2154.0 2103 56.3
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2151.3 1950 59.9
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2146.3 1947 60.1
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2115.5 1829 61.6
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2113.2 1933 58.4
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2100.1 1906 59.0
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2092.0 1952 57.5
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2087.8 1946 58.2
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2075.4 1905 58.3
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2068.1 1933 57.8
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2061.2 1943 57.3
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2051.9 1932 57.6
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2042.7 1901 57.4
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 2039.6 1963 56.8
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 2038.8 1965 57.0
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2035.0 1926 57.1
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1931.0 2103 51.8
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1898.2 1543 64.4
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1778.1 1611 59.0
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1775.0 1090 81.6
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1654.4 1334 65.8
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1648.6 1939 49.5
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1582.4 1779 49.5
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1285.0 2178 39.1
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1256.1 794 80.0
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1237.2 1949 39.5
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1206.8 2201 36.5
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1110.9 2105 35.6
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 6.2e-302 1042.0 800 69.5
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 5.3e-277 959.1 792 64.4
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.2e-273 948.0 1397 42.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 5.0e-243 846.3 689 63.9
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.0e-240 838.6 2098 30.9
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 6.8e-240 835.9 1151 43.4
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 1.3e-214 751.9 739 55.8
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.6e-188 665.2 722 51.8
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 8.1e-185 652.9 798 49.4
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 2.8e-161 574.7 417 68.8
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 8.5e-150 536.6 359 73.0
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 8.9e-107 393.7 499 49.1
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.5e-93 349.7 217 78.8
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 4.9e-89 334.7 198 83.8
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 3.2e-72 278.9 225 63.6
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 9.9e-66 257.3 311 47.9
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 6.0e-63 248.1 273 48.4
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.8e-62 246.5 317 49.2
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 1.0e-54 220.7 124 87.9
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 4.1e-43 182.2 246 45.9
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.1e-40 174.1 199 45.7
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.5e-34 153.7 127 58.3
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.2e-31 144.1 80 88.8
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.4e-30 140.6 135 54.1
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 2.6e-21 109.8 475 25.9
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 4.4e-21 109.0 156 43.6
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 8.2e-20 104.8 120 54.2
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 5.0e-17 95.5 68 64.7
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.1e-16 94.4 74 67.6
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 4.7e-15 89.0 61 70.5
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.3e-14 86.7 69 58.0
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.4e-11 77.4 72 52.8
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 1.3e-09 70.9 98 37.8
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 2.2e-09 70.1 316 27.5
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 4.2e-08 65.9 71 53.5
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 1.0e-06 61.2 93 43.0


User provided reference genes

Program Settings