Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 6.1e-264 913.7 487 100.0
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 6.4e-189 664.5 476 73.3
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 3.0e-186 655.6 478 73.8
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 6.2e-176 621.3 479 69.5
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 4.9e-173 611.7 481 68.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 4.3e-169 598.6 482 67.2
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.2e-166 590.5 484 67.8
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.0e-165 587.4 478 66.3
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.4e-164 583.6 480 64.6
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 5.5e-164 581.6 481 66.3
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.3e-162 577.0 479 66.2
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.3e-162 577.0 477 64.8
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.5e-161 573.5 484 64.9
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 4.3e-161 572.0 482 64.9
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.6e-160 570.1 482 63.9
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 4.8e-160 568.5 478 64.9
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.8e-159 566.6 491 62.3
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 6.9e-159 564.7 477 63.7
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.5e-158 563.5 477 63.5
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.0e-158 563.1 490 63.9
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.5e-158 562.0 484 64.5
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 4.5e-158 562.0 494 63.6
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 7.7e-158 561.2 479 63.9
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.3e-157 560.5 477 63.9
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 5.0e-157 558.5 475 64.0
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 9.4e-156 554.3 485 62.7
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.1e-155 553.1 481 64.9
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.1e-155 553.1 479 63.5
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.6e-155 552.4 479 63.0
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 6.1e-155 551.6 484 62.2
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.1e-153 547.4 450 63.6
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.5e-153 547.0 484 62.0
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.5e-153 547.0 485 62.5
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.4e-151 540.4 477 62.3
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 1.4e-151 540.4 490 60.2
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 6.9e-151 538.1 483 62.3
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 9.1e-151 537.7 487 61.4
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 9.1e-151 537.7 477 61.6
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 2.6e-150 536.2 485 60.0
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 3.6e-147 525.8 478 61.3
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.1e-147 525.0 476 60.9
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.4e-146 523.9 489 60.1
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 3.0e-146 522.7 476 60.7
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 8.8e-146 521.2 479 59.7
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.0e-145 520.0 478 61.5
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 2.0e-145 520.0 479 60.3
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.3e-145 519.2 483 58.4
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.7e-145 518.5 478 61.7
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.3e-144 517.3 488 59.4
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 8.2e-144 514.6 478 61.1
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 3.1e-143 512.7 477 58.7
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.1e-143 512.7 483 59.6
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.0e-142 510.0 486 59.1
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 5.9e-142 508.4 456 62.1
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.3e-141 507.3 477 57.7
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.9e-141 506.1 482 60.2
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 2.7e-139 499.6 483 58.8
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 6.1e-139 498.4 452 61.5
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.2e-138 495.4 488 55.7
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 8.8e-138 494.6 500 53.8
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.2e-137 494.2 492 56.5
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.2e-137 494.2 488 57.2
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.5e-137 493.8 497 58.6
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.0e-137 493.4 486 56.2
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 2.6e-137 493.0 488 56.6
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 4.4e-137 492.3 382 67.0
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 9.7e-137 491.1 481 57.8
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 9.7e-137 491.1 492 56.5
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.3e-136 490.7 482 59.1
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 3.7e-136 489.2 488 56.4
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 6.3e-136 488.4 488 56.4
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 6.3e-136 488.4 496 55.4
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 8.2e-136 488.0 489 56.4
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.4e-135 487.3 495 57.0
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.4e-135 486.5 479 56.6
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 4.1e-135 485.7 485 57.9
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 5.3e-135 485.3 436 61.9
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 7.0e-135 485.0 493 56.8
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 1.6e-134 483.8 483 55.1
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 2.0e-134 483.4 485 55.9
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.7e-134 483.0 503 54.7
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 2.7e-134 483.0 485 55.7
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 3.5e-134 482.6 484 55.0
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.5e-134 482.6 538 52.2
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 4.5e-134 482.3 496 54.8
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 5.9e-134 481.9 516 53.7
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.0e-133 481.1 485 57.5
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 2.2e-133 479.9 491 55.0
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.2e-133 479.9 491 55.0
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.5e-133 478.4 488 54.7
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 6.5e-133 478.4 534 50.6
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 8.5e-133 478.0 511 53.8
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.5e-132 477.2 487 56.9
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.5e-132 476.5 491 55.4
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.5e-129 467.2 510 52.4
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 4.4e-129 465.7 487 54.8
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.8e-128 463.0 481 56.3
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.4e-127 459.9 398 58.8
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.1e-127 459.5 489 56.0
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 5.9e-126 455.3 490 53.7
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 4.2e-124 449.1 477 54.9
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.8e-123 446.4 476 53.4
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 2.3e-122 443.4 476 53.6
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.5e-121 440.7 484 52.1
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.7e-120 437.2 422 56.6
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.8e-119 433.7 491 52.5
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 3.1e-119 433.0 473 53.1
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 5.0e-117 425.6 434 54.6
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 9.5e-116 421.4 485 50.9
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 4.0e-114 416.0 400 57.2
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 4.4e-113 412.5 489 49.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.2e-110 404.4 484 49.4
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.5e-108 397.5 466 48.7
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 3.6e-107 392.9 477 47.6
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.4e-105 386.0 484 47.5
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 5.8e-105 385.6 422 51.2
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 5.8e-105 385.6 470 48.5
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 4.9e-104 382.5 491 46.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.8e-98 364.0 465 48.0
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.0e-93 348.2 519 43.7
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.0e-93 348.2 519 43.7
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.3e-93 347.1 474 45.4
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.1e-93 345.9 505 41.2
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.6e-92 342.4 382 50.5
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.2e-88 330.5 472 42.2
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.8e-86 322.0 518 38.4
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.5e-81 307.8 432 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.5e-76 290.4 455 38.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 6.4e-72 275.8 394 44.2
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 3.2e-71 273.5 252 58.7
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 3.9e-69 266.5 492 37.4
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.8e-66 257.7 265 57.4
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.1e-60 238.4 293 46.1
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 8.2e-59 232.3 155 79.4
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.3e-58 229.6 542 33.9
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.9e-56 223.0 548 31.9
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.1e-55 221.9 189 65.6
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 7.9e-54 215.7 634 31.5
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 5.9e-49 199.5 260 48.5
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.5e-44 184.1 276 41.7
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 3.7e-43 180.3 156 64.1
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 5.3e-42 176.4 136 68.4
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.8e-40 170.2 166 58.4
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.9e-39 167.9 99 78.8
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.2e-39 167.2 151 62.9
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 1.5e-36 158.3 99 74.7
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.5e-33 146.7 137 57.7
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 3.2e-31 140.6 129 50.4
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.7e-27 128.3 89 68.5
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.7e-24 118.2 151 47.7
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.9e-16 90.9 97 53.6
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 1.8e-10 71.6 39 79.5
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.8e-10 71.6 77 46.8
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 4.5e-09 67.0 119 31.9


User provided reference genes

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