Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 3.8e-67 258.1 134 100.0
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 3.1e-16 89.0 55 76.4
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 3.4e-15 85.5 57 71.9
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 7.6e-15 84.3 62 66.1
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 7.6e-15 84.3 58 65.5
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 7.6e-15 84.3 58 65.5
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 7.6e-15 84.3 58 65.5
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 7.6e-15 84.3 58 65.5
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 9.9e-15 84.0 56 67.9
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 9.9e-15 84.0 56 67.9
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 9.9e-15 84.0 56 67.9
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 9.9e-15 84.0 59 64.4
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.3e-14 83.6 55 76.4
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.3e-14 83.6 55 69.1
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 1.3e-14 83.6 57 70.2
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 2.2e-14 82.8 54 68.5
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.2e-14 82.8 55 67.3
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.9e-14 82.4 56 67.9
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.9e-14 81.6 57 63.2
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.4e-13 80.1 55 61.8
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.9e-13 79.7 61 65.6
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.9e-13 79.7 57 61.4
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.4e-13 79.3 55 67.3
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 2.4e-13 79.3 55 61.8
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.4e-13 79.3 55 69.1
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.4e-13 79.3 55 69.1
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.2e-13 79.0 59 61.0
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 3.2e-13 79.0 61 65.6
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.1e-13 78.6 55 65.5
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 4.1e-13 78.6 52 61.5
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 4.1e-13 78.6 58 67.2
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 4.1e-13 78.6 57 64.9
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 5.4e-13 78.2 55 65.5
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 5.4e-13 78.2 59 59.3
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 5.4e-13 78.2 59 67.8
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 7.1e-13 77.8 59 69.5
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 7.1e-13 77.8 43 76.7
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 7.1e-13 77.8 43 76.7
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 7.1e-13 77.8 46 76.1
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 9.2e-13 77.4 56 67.9
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 9.2e-13 77.4 60 65.0
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 9.2e-13 77.4 57 68.4
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.2e-12 77.0 42 78.6
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.6e-12 76.6 57 61.4
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.6e-12 76.6 56 66.1
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 1.6e-12 76.6 59 62.7
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 2.1e-12 76.3 56 60.7
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.1e-12 76.3 55 60.0
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.7e-12 75.9 41 82.9
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 2.7e-12 75.9 68 57.4
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 3.5e-12 75.5 60 61.7
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 4.6e-12 75.1 56 57.1
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 4.6e-12 75.1 44 72.7
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 6.0e-12 74.7 60 55.0
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 6.0e-12 74.7 56 62.5
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 6.0e-12 74.7 41 80.5
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 6.0e-12 74.7 56 58.9
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 7.8e-12 74.3 47 72.3
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 7.8e-12 74.3 59 59.3
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 7.8e-12 74.3 41 80.5
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 7.8e-12 74.3 55 70.9
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 7.8e-12 74.3 62 56.5
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 1.0e-11 73.9 64 60.9
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.0e-11 73.9 46 69.6
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 1.0e-11 73.9 56 57.1
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 1.0e-11 73.9 57 57.9
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-11 73.9 52 63.5
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 1.3e-11 73.6 53 62.3
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 1.7e-11 73.2 56 64.3
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.7e-11 73.2 58 58.6
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.7e-11 73.2 58 58.6
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 2.3e-11 72.8 56 60.7
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 2.3e-11 72.8 41 78.0
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.3e-11 72.8 55 63.6
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 3.0e-11 72.4 41 75.6
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.0e-11 72.4 57 56.1
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 3.9e-11 72.0 55 63.6
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 3.9e-11 72.0 63 54.0
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 3.9e-11 72.0 59 55.9
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 5.1e-11 71.6 56 58.9
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 6.6e-11 71.2 50 64.0
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 6.6e-11 71.2 58 60.3
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 8.6e-11 70.9 56 60.7
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 8.6e-11 70.9 55 67.3
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 8.6e-11 70.9 55 65.5
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 8.6e-11 70.9 59 59.3
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 1.1e-10 70.5 60 58.3
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 1.1e-10 70.5 55 60.0
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.1e-10 70.5 53 56.6
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.1e-10 70.5 44 70.5
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.5e-10 70.1 50 60.0
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.5e-10 70.1 60 56.7
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.9e-10 69.7 55 56.4
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 1.9e-10 69.7 54 57.4
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 1.9e-10 69.7 76 47.4
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.5e-10 69.3 55 60.0
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 3.3e-10 68.9 40 70.0
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 3.3e-10 68.9 52 57.7
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 3.3e-10 68.9 40 72.5
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 4.3e-10 68.6 41 68.3
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 4.3e-10 68.6 41 68.3
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 5.6e-10 68.2 56 57.1
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 5.6e-10 68.2 56 60.7
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 7.3e-10 67.8 60 55.0
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 7.3e-10 67.8 52 55.8
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 1.6e-09 66.6 52 59.6
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.6e-09 66.6 52 59.6
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.6e-09 66.6 54 55.6
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 2.1e-09 66.2 48 56.2
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 2.1e-09 66.2 48 56.2
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.1e-09 66.2 57 56.1
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 2.1e-09 66.2 55 50.9
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 2.8e-09 65.9 39 74.4
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 3.6e-09 65.5 62 50.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 3.6e-09 65.5 42 64.3
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 6.2e-09 64.7 58 51.7
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 8.1e-09 64.3 40 70.0
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 8.1e-09 64.3 56 53.6
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.1e-08 63.9 45 57.8
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 1.4e-08 63.5 38 65.8
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.4e-08 62.8 36 75.0
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 4.0e-08 62.0 45 71.1
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.2e-07 60.5 52 55.8
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 4.4e-07 58.5 52 51.9
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.7e-06 56.6 52 48.1
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 2.2e-06 56.2 38 57.9
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 2.9e-06 55.8 40 67.5


User provided reference genes

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