Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 3.8e-157 558.1 288 100.0
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.1e-91 339.7 214 84.6
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 8.2e-83 311.2 272 68.4
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 8.7e-77 291.2 262 61.8
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.4e-76 288.1 274 63.1
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 7.9e-70 268.1 261 57.5
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 2.3e-69 266.5 237 62.0
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 3.9e-69 265.8 262 56.9
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.1e-66 257.7 266 60.5
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 6.9e-66 255.0 299 52.2
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.2e-65 254.2 312 49.4
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.5e-65 253.8 231 61.0
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 4.5e-65 252.3 248 58.9
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 7.7e-65 251.5 263 55.5
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.0e-64 251.1 263 55.5
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 1.3e-64 250.8 269 56.5
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.7e-64 250.4 257 56.4
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.2e-64 250.0 259 59.1
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 1.9e-63 246.9 231 59.7
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.9e-63 246.9 304 51.6
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.1e-62 243.4 274 52.9
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.0e-61 241.1 274 52.6
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 5.2e-61 238.8 243 56.8
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 5.2e-61 238.8 301 51.2
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.0e-60 236.9 268 54.1
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 5.7e-60 235.3 231 58.9
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 5.7e-60 235.3 262 54.6
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 8.2e-59 231.5 262 53.8
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.4e-58 230.7 251 53.8
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.4e-58 230.7 255 51.4
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.8e-58 230.3 238 55.9
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.8e-58 230.3 260 53.5
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.1e-58 229.6 267 54.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.1e-58 229.2 249 56.2
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.3e-58 228.8 262 55.3
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 5.3e-58 228.8 314 49.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 7.0e-58 228.4 258 53.1
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.6e-57 227.3 242 55.8
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 2.0e-57 226.9 283 50.2
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.2e-56 223.4 262 54.6
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.2e-56 223.4 235 57.0
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 3.2e-55 219.5 254 49.2
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 9.4e-55 218.0 317 45.4
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 9.4e-55 218.0 233 57.9
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.2e-54 217.6 312 44.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 2.1e-54 216.9 256 51.6
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.1e-54 216.9 282 49.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.4e-53 214.2 240 52.5
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.8e-53 213.8 274 48.9
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.8e-53 213.8 260 49.2
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 4.0e-53 212.6 204 59.3
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 4.0e-53 212.6 240 54.2
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.7e-53 211.8 240 52.1
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 8.8e-53 211.5 249 53.0
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.3e-52 209.5 253 52.6
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 9.7e-52 208.0 240 51.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.3e-51 207.6 272 50.0
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.8e-51 206.5 291 44.7
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 6.3e-51 205.3 249 51.4
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.4e-50 204.1 256 50.0
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.0e-50 201.8 267 46.4
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 2.7e-49 199.9 301 42.9
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.3e-48 197.6 202 56.4
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.2e-48 196.8 252 48.0
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.2e-48 196.8 245 50.2
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.9e-48 196.4 274 43.1
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.5e-48 195.3 234 53.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.5e-47 194.1 268 47.0
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.5e-47 194.1 272 48.5
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.9e-47 193.7 288 44.4
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.9e-47 193.7 238 47.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.9e-47 193.7 252 49.6
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.7e-46 189.9 257 49.4
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.7e-46 189.9 257 49.4
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 3.6e-46 189.5 250 49.6
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.5e-44 184.1 271 46.9
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.6e-44 183.3 281 42.3
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.4e-44 182.6 281 42.3
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 5.7e-44 182.2 281 42.7
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 9.8e-44 181.4 248 48.0
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.2e-43 180.3 262 46.9
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.2e-43 180.3 238 46.6
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.8e-43 179.1 278 44.6
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 6.3e-43 178.7 326 39.0
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 8.3e-43 178.3 236 47.5
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 5.4e-42 175.6 247 44.5
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.3e-37 160.2 260 42.3
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 5.2e-37 159.1 257 42.4
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.6e-36 156.8 275 40.0
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.4e-36 156.0 270 41.5
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 5.7e-36 155.6 243 43.2
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 7.5e-36 155.2 258 41.5
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.8e-35 153.3 237 44.3
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.1e-34 151.4 238 44.5
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.4e-34 151.0 257 40.9
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.8e-34 150.6 368 31.8
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 7.0e-34 148.7 257 41.2
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 9.2e-34 148.3 178 51.1
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.2e-33 147.9 256 38.7
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.0e-33 147.1 244 43.9
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 2.9e-32 143.3 147 55.1
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 5.0e-32 142.5 248 37.9
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 5.0e-32 142.5 270 40.4
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 8.6e-32 141.7 259 39.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.1e-31 141.4 257 38.9
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 4.3e-31 139.4 254 39.4
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.2e-30 137.9 274 35.8
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.6e-30 137.5 209 43.1
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 4.7e-30 136.0 234 38.5
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.0e-29 134.8 232 38.8
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 4.0e-29 132.9 317 35.0
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.2e-29 132.5 273 38.8
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 8.9e-29 131.7 169 50.3
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.2e-28 131.3 254 35.4
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.2e-28 131.3 254 35.4
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.2e-28 131.3 254 35.4
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 5.7e-28 129.0 233 39.5
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 4.1e-26 122.9 88 63.6
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 9.2e-26 121.7 70 82.9
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.6e-25 120.9 275 36.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.3e-24 117.9 234 37.6
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.7e-24 117.5 253 38.7
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 3.0e-24 116.7 206 38.3
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.4e-21 107.8 223 35.9
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.4e-21 107.8 233 36.9
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.8e-21 107.5 308 33.1
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 8.9e-21 105.1 282 31.2
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.5e-20 104.4 264 33.3
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 7.5e-20 102.1 215 37.7
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.9e-18 97.4 249 31.3
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 7.0e-18 95.5 300 30.0
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.6e-17 94.4 177 39.5
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.7e-17 93.6 82 56.1
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.0e-16 91.7 108 46.3
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.0e-16 91.7 268 31.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.7e-16 90.9 205 36.1
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 8.1e-14 82.0 282 26.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.1e-14 82.0 282 26.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.1e-14 82.0 282 26.6
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.4e-13 81.3 300 28.7
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 8.9e-13 78.6 296 25.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.2e-12 78.2 300 28.0
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.7e-11 73.2 312 24.7
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.7e-09 67.0 72 47.2
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.6e-09 66.2 50 62.0
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 4.6e-09 66.2 54 51.9
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.1e-08 62.8 72 43.1
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 5.1e-08 62.8 325 24.6
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.1e-07 61.6 139 36.7
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.5e-07 61.2 69 44.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.5e-07 60.5 61 47.5
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.5e-07 60.5 69 42.0
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 5.6e-07 59.3 316 23.1
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 5.6e-07 59.3 316 23.1
Aa31LG3G7440 Aethionema arabicum HOM05D003971 ORTHO05D004762 4.7e-06 56.2 80 43.8


User provided reference genes

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