Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23093 Davidia involucrata HOM05D003231 ORTHO05D182435 1.1e-71 273.1 130 100.0
Dinv16485 Davidia involucrata HOM05D003231 ORTHO05D183403 5.7e-68 260.8 130 93.1
Dinv09239 Davidia involucrata HOM05D003231 ORTHO05D003865 3.2e-34 148.7 95 75.8
Dinv09240 Davidia involucrata HOM05D003231 ORTHO05D003865 4.3e-31 138.3 95 72.6
Dinv37392 Davidia involucrata HOM05D003231 ORTHO05D003865 2.2e-27 125.9 95 64.2
Lj2A622T60 Lonicera japonica HOM05D003231 ORTHO05D003865 1.3e-19 100.1 95 52.6
Duzib150G0378 Durio zibethinus HOM05D003231 ORTHO05D003865 1.1e-18 97.1 95 51.6
CSS0026000 Camellia sinensis var. sinensis HOM05D003231 ORTHO05D003865 2.4e-18 95.9 96 55.2
Lj2A622G59 Lonicera japonica HOM05D003231 ORTHO05D003865 2.4e-18 95.9 92 51.1
Rhsim04G0219000 Rhododendron simsii HOM05D003231 ORTHO05D003865 2.4e-18 95.9 93 52.7
CiPaw.07G214900 Carya illinoinensis HOM05D003231 ORTHO05D003865 3.2e-18 95.5 95 52.6
Haze_21690 Corylus avellana HOM05D003231 ORTHO05D003865 4.2e-18 95.1 95 51.6
vmacro00794 Vaccinium macrocarpon HOM05D003231 ORTHO05D003865 7.1e-18 94.4 93 52.7
Rhsim08G0224200 Rhododendron simsii HOM05D003231 ORTHO05D003865 9.2e-18 94.0 93 52.7
Cfa013246 Carpinus fangiana HOM05D003231 ORTHO05D003865 1.2e-17 93.6 95 51.6
Thecc.09G002000 Theobroma cacao HOM05D003231 ORTHO05D003865 1.6e-17 93.2 96 52.1
Duzib168G0939 Durio zibethinus HOM05D003231 ORTHO05D003865 2.1e-17 92.8 95 50.5
GSVIVG01003918001 Vitis vinifera HOM05D003231 ORTHO05D003865 2.7e-17 92.4 95 50.5
GSVIVG01006883001 Vitis vinifera HOM05D003231 ORTHO05D003865 2.7e-17 92.4 95 50.5
Gohir.A06G108000 Gossypium hirsutum HOM05D003231 ORTHO05D003865 4.6e-17 91.7 96 51.0
Dinv06253 Davidia involucrata HOM05D003231 ORTHO05D003865 6.0e-17 91.3 93 51.6
Gohir.D06G110100 Gossypium hirsutum HOM05D003231 ORTHO05D003865 6.0e-17 91.3 96 51.0
Ciclev10011920m.g Citrus clementina HOM05D003231 ORTHO05D003865 1.0e-16 90.5 96 51.0
vmacro07258 Vaccinium macrocarpon HOM05D003231 ORTHO05D003865 1.7e-16 89.7 93 52.7
Potri.006G281200 Populus trichocarpa HOM05D003231 ORTHO05D003865 2.3e-16 89.4 95 49.5
Gorai.010G125100 Gossypium raimondii HOM05D003231 ORTHO05D003865 3.0e-16 89.0 96 50.0
Cc01_g06730 Coffea canephora HOM05D003231 ORTHO05D003865 1.5e-15 86.7 95 46.3
QL12p024649 Quercus lobata HOM05D003231 ORTHO05D003865 1.5e-15 86.7 94 50.0
COL.COLO4_18634 Corchorus olitorius HOM05D003231 ORTHO05D003865 1.9e-15 86.3 95 46.3
Cpa.g.sc148.16 Carica papaya HOM05D003231 ORTHO05D003865 1.3e-14 83.6 95 53.7
Sabra06G0217500 Salix brachista HOM05D003231 ORTHO05D003865 2.1e-14 82.8 93 48.4
Ciclev10011811m.g Citrus clementina HOM05D003231 ORTHO05D003865 3.6e-14 82.0 95 46.3
Hma1.2p1_0080F.1_g042200 Hydrangea macrophylla HOM05D003231 ORTHO05D003865 3.6e-14 82.0 95 48.4
Hma1.2p1_1544F.1_g289870 Hydrangea macrophylla HOM05D003231 ORTHO05D003865 3.6e-14 82.0 95 48.4
Potri.006G281400 Populus trichocarpa HOM05D003231 ORTHO05D003865 8.1e-14 80.9 95 45.3
Gohir.D13G185500 Gossypium hirsutum HOM05D003231 ORTHO05D003865 1.1e-13 80.5 95 45.3
MELO3C003645.2 Cucumis melo HOM05D003231 ORTHO05D003865 1.4e-13 80.1 94 43.6
Sabra06G0217300 Salix brachista HOM05D003231 ORTHO05D003865 1.4e-13 80.1 95 46.3
TAR362G1099 Trochodendron aralioides HOM05D003231 ORTHO05D003865 1.4e-13 80.1 94 48.9
Sopen06g009630 Solanum pennellii HOM05D003231 ORTHO05D003865 1.8e-13 79.7 92 45.7
GSVIVG01022781001 Vitis vinifera HOM05D003231 ORTHO05D003865 1.8e-13 79.7 95 43.2
CiPaw.08G017500 Carya illinoinensis HOM05D003231 ORTHO05D003865 6.9e-13 77.8 95 45.3
CsaV3_3G046920 Cucumis sativus L. HOM05D003231 ORTHO05D003865 9.0e-13 77.4 94 42.6
MD15G1110400 Malus domestica HOM05D003231 ORTHO05D003865 9.0e-13 77.4 95 44.2
Nitab4.5_0000299g0150 Nicotiana tabacum HOM05D003231 ORTHO05D003865 9.0e-13 77.4 92 44.6
Manes.16G138400 Manihot esculenta HOM05D003231 ORTHO05D003865 1.2e-12 77.0 95 46.3
Nitab4.5_0010241g0010 Nicotiana tabacum HOM05D003231 ORTHO05D003865 1.2e-12 77.0 92 44.6
MSTRG.10658 Avicennia marina HOM05D003231 ORTHO05D003865 2.0e-12 76.3 93 40.9
Lalb_Chr23g0268911 Lupinus albus HOM05D003231 ORTHO05D003865 2.0e-12 76.3 96 42.7
TWI32G0035 Tripterygium wilfordii HOM05D003231 ORTHO05D003865 2.0e-12 76.3 96 44.8
TWI63G1568 Tripterygium wilfordii HOM05D003231 ORTHO05D003865 2.0e-12 76.3 96 45.8
Gorai.013G211500 Gossypium raimondii HOM05D003231 ORTHO05D003865 2.6e-12 75.9 68 54.4
Manes.07G090400 Manihot esculenta HOM05D003231 ORTHO05D003865 2.6e-12 75.9 94 44.7
Solyc04g064810.4 Solanum lycopersicum HOM05D003231 ORTHO05D003865 3.4e-12 75.5 92 44.6
Sopen04g026770 Solanum pennellii HOM05D003231 ORTHO05D003865 3.4e-12 75.5 92 44.6
PSO447G0312 Papaver somniferum HOM05D003231 ORTHO05D003865 4.4e-12 75.1 92 45.7
RcHm_v2.0_Chr6g0312251 Rosa chinensis HOM05D003231 ORTHO05D003865 4.4e-12 75.1 93 45.2
TAR362G1253 Trochodendron aralioides HOM05D003231 ORTHO05D003865 4.4e-12 75.1 70 57.1
PSO210G3455 Papaver somniferum HOM05D003231 ORTHO05D003865 7.6e-12 74.3 94 44.7
arahy.Tifrunner.gnm1.ann1.BPJ3T6 Arachis hypogaea HOM05D003231 ORTHO05D003865 9.9e-12 73.9 95 41.1
ClCG05G017420 Citrullus lanatus HOM05D003231 ORTHO05D003865 1.3e-11 73.6 94 40.4
FAN15G1275 Fragaria x ananassa HOM05D003231 ORTHO05D003865 1.3e-11 73.6 93 43.0
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 1.3e-11 73.6 93 43.0
Sed0022904 Sechium edule HOM05D003231 ORTHO05D003865 1.7e-11 73.2 93 43.0
arahy.Tifrunner.gnm1.ann1.1UP6DU Arachis hypogaea HOM05D003231 ORTHO05D003865 2.2e-11 72.8 95 41.1
Dinv40961 Davidia involucrata HOM05D000271 ORTHO05D004758 2.2e-11 72.8 46 80.4
FvH4_2g30651 Fragaria vesca HOM05D003231 ORTHO05D003865 2.2e-11 72.8 93 41.9
FAN24G1616 Fragaria x ananassa HOM05D003231 ORTHO05D003865 2.2e-11 72.8 93 41.9
Glyma.14G132600 Glycine max HOM05D003231 ORTHO05D003865 2.2e-11 72.8 96 41.7
Gohir.A13G181800 Gossypium hirsutum HOM05D003231 ORTHO05D003865 2.2e-11 72.8 95 41.1
Nitab4.5_0002974g0070 Nicotiana tabacum HOM05D003231 ORTHO05D003865 2.2e-11 72.8 92 42.4
Atru.chr7.2716 Acer truncatum HOM05D003231 ORTHO05D003865 2.9e-11 72.4 97 44.3
Lalb_Chr11g0064081 Lupinus albus HOM05D003231 ORTHO05D003865 2.9e-11 72.4 96 40.6
Nitab4.5_0011301g0030 Nicotiana tabacum HOM05D003231 ORTHO05D003865 2.9e-11 72.4 92 41.3
Carub.0004s0366 Capsella rubella HOM05D003231 ORTHO05D003865 3.8e-11 72.0 95 42.1
Glyma.11G175328 Glycine max HOM05D003231 ORTHO05D003865 3.8e-11 72.0 96 41.7
Aa31LG7G12420 Aethionema arabicum HOM05D003231 ORTHO05D003865 4.9e-11 71.6 95 43.2
CAN.G744.15 Capsicum annuum HOM05D003231 ORTHO05D003865 4.9e-11 71.6 92 41.3
DCAR_021019 Daucus carota HOM05D003231 ORTHO05D003865 4.9e-11 71.6 93 39.8
MD08G1133800 Malus domestica HOM05D003231 ORTHO05D003865 6.4e-11 71.2 95 43.2
AL7G20980 Arabidopsis lyrata HOM05D003231 ORTHO05D003865 8.4e-11 70.9 97 42.3
PGR044G0019 Punica granatum HOM05D003231 ORTHO05D003865 8.4e-11 70.9 94 42.6
Glyma.17G201100 Glycine max HOM05D003231 ORTHO05D003865 1.1e-10 70.5 96 40.6
HanXRQChr03g0079191 Helianthus annuus HOM05D003231 ORTHO05D003865 1.1e-10 70.5 93 40.9
PGSC0003DMG400024848 Solanum tuberosum HOM05D003231 ORTHO05D003865 1.1e-10 70.5 92 42.4
Aqoxy7G04165 Aquilegia oxysepala HOM05D003231 ORTHO05D003865 1.9e-10 69.7 94 42.6
Sp7g28960 Schrenkiella parvula HOM05D003231 ORTHO05D003865 1.9e-10 69.7 97 42.3
Aa31LG2G19240 Aethionema arabicum HOM05D003231 ORTHO05D003865 2.4e-10 69.3 95 42.1
AT4G31080 Arabidopsis thaliana HOM05D003231 ORTHO05D003865 2.4e-10 69.3 96 42.7
Thhalv10025341m.g Eutrema salsugineum HOM05D003231 ORTHO05D003865 2.4e-10 69.3 97 42.3
Lj5g0000952 Lotus japonicus HOM05D003231 ORTHO05D003865 2.4e-10 69.3 95 40.0
Peaxi162Scf00263g00042 Petunia axillaris HOM05D003231 ORTHO05D003865 2.4e-10 69.3 92 39.1
Sp4g03330 Schrenkiella parvula HOM05D003231 ORTHO05D003865 4.2e-10 68.6 95 40.0
Actinidia23641 Actinidia chinensis HOM05D003231 ORTHO05D003865 5.4e-10 68.2 96 45.8
AL4G14680 Arabidopsis lyrata HOM05D003231 ORTHO05D003865 5.4e-10 68.2 95 42.1
Manes.01G174800 Manihot esculenta HOM05D003231 ORTHO05D003865 5.4e-10 68.2 94 41.5
Peaxi162Scf00033g00092 Petunia axillaris HOM05D003231 ORTHO05D003865 5.4e-10 68.2 92 38.0
Rhsim13G0137200 Rhododendron simsii HOM05D003231 ORTHO05D003865 5.4e-10 68.2 76 46.1
VMungo0647G2491 Vigna mungo HOM05D003231 ORTHO05D003865 5.4e-10 68.2 95 37.9
Carub.0007s0944 Capsella rubella HOM05D003231 ORTHO05D003865 7.1e-10 67.8 96 42.7
CAN.G256.18 Capsicum annuum HOM05D003231 ORTHO05D003865 7.1e-10 67.8 85 41.2
Sopen06g019710 Solanum pennellii HOM05D003231 ORTHO05D003865 7.1e-10 67.8 65 47.7
arahy.Tifrunner.gnm1.ann1.GT9AC6 Arachis hypogaea HOM05D003231 ORTHO05D003865 9.3e-10 67.4 96 39.6
Lalb_Chr08g0243641 Lupinus albus HOM05D003231 ORTHO05D003865 9.3e-10 67.4 93 38.7
Lalb_Chr24g0402411 Lupinus albus HOM05D003231 ORTHO05D003865 9.3e-10 67.4 96 40.6
DCAR_019594 Daucus carota HOM05D003231 ORTHO05D003865 1.6e-09 66.6 93 40.9
Eucgr.D01078 Eucalyptus grandis HOM05D003231 ORTHO05D003865 1.6e-09 66.6 93 40.9
Lj1g0002631 Lotus japonicus HOM05D003231 ORTHO05D003865 1.6e-09 66.6 91 39.6
Solyc06g054650.3 Solanum lycopersicum HOM05D003231 ORTHO05D003865 1.6e-09 66.6 65 47.7
THA.LOC104803575 Tarenaya hassleriana HOM05D003231 ORTHO05D003865 1.6e-09 66.6 96 43.8
CAN.G963.1 Capsicum annuum HOM05D003231 ORTHO05D003865 2.1e-09 66.2 91 39.6
Thhalv10000179m.g Eutrema salsugineum HOM05D003231 ORTHO05D003865 2.7e-09 65.9 95 38.9
Sc19g0005970 Simmondsia chinensis HOM05D003231 ORTHO05D003865 2.7e-09 65.9 93 40.9
AT2G24330 Arabidopsis thaliana HOM05D003231 ORTHO05D003865 3.5e-09 65.5 95 40.0
SalBow1G6495 Salvia bowleyana HOM05D003231 ORTHO05D003865 3.5e-09 65.5 94 38.3
BraA04t17473Z Brassica rapa HOM05D003231 ORTHO05D003865 4.6e-09 65.1 95 37.9
Psat6g031880 Pisum sativum HOM05D003231 ORTHO05D003865 4.6e-09 65.1 93 39.8
THA.LOC104819916 Tarenaya hassleriana HOM05D003231 ORTHO05D003865 4.6e-09 65.1 96 42.7
Glyma.04G074400 Glycine max HOM05D003231 ORTHO05D003865 6.0e-09 64.7 96 39.6
SalBow6G3063 Salvia bowleyana HOM05D003231 ORTHO05D003865 6.0e-09 64.7 91 37.4
CANSAT25G1032 Cannabis sativa HOM05D003231 ORTHO05D003865 7.8e-09 64.3 94 38.3
Nn7g36616 Nelumbo nucifera HOM05D003231 ORTHO05D003865 7.8e-09 64.3 92 40.2
Phvul.001G057800 Phaseolus vulgaris HOM05D003231 ORTHO05D003865 1.7e-08 63.2 95 35.8
Medtr3g108690 Medicago truncatula HOM05D003231 ORTHO05D003865 2.3e-08 62.8 96 36.5
Glyma.06G075600 Glycine max HOM05D003231 ORTHO05D003865 3.0e-08 62.4 96 38.5
EL10Ac3g06791 Beta vulgaris HOM05D003231 ORTHO05D003865 5.1e-08 61.6 93 39.8
BcaB03g12675 Brassica carinata HOM05D003231 ORTHO05D003865 6.6e-08 61.2 96 40.6
C04p53940 Brassica napus HOM05D003231 ORTHO05D003865 8.7e-08 60.8 96 37.5
BcaC02g08477 Brassica carinata HOM05D003231 ORTHO05D003865 1.1e-07 60.5 96 37.5
A04p18620 Brassica napus HOM05D003231 ORTHO05D003865 1.1e-07 60.5 96 37.5
BolC4t26942H Brassica oleracea HOM05D003231 ORTHO05D003865 1.1e-07 60.5 96 37.5
Sed0011155 Sechium edule HOM05D003231 ORTHO05D003865 1.1e-07 60.5 69 42.0
Ah.13g075260 Amaranthus hybridus HOM05D003231 ORTHO05D003865 1.5e-07 60.1 93 39.8
Oeu014728.1 Olea europaea HOM05D003231 ORTHO05D003865 1.5e-07 60.1 95 40.0
ECA236G1370 Erigeron canadensis HOM05D003231 ORTHO05D003865 2.5e-07 59.3 69 42.0
Medtr1g010010 Medicago truncatula HOM05D003231 ORTHO05D003865 2.5e-07 59.3 93 33.3
TPR.G12121 Trifolium pratense HOM05D003231 ORTHO05D003865 2.5e-07 59.3 94 36.2
unitig_748.g7169 Utricularia gibba HOM05D003231 ORTHO05D003865 2.5e-07 59.3 71 40.8
Lsat_1_v5_gn_9_99280 Lactuca sativa HOM05D003231 ORTHO05D003865 3.3e-07 58.9 91 34.1
Oeu061897.1 Olea europaea HOM05D003231 ORTHO05D003865 3.3e-07 58.9 84 39.3
SGA_v2.0_scaffold464G52005 Striga asiatica HOM05D003231 ORTHO05D003865 3.3e-07 58.9 92 37.0
TPR.G12507 Trifolium pratense HOM05D003231 ORTHO05D003865 3.3e-07 58.9 95 33.7
Ah.04g153280 Amaranthus hybridus HOM05D003231 ORTHO05D003865 4.3e-07 58.5 92 35.9
Prupe.1G462700 Prunus persica HOM05D003231 ORTHO05D003865 5.6e-07 58.2 64 45.3
SGA_v2.0_scaffold63G21827 Striga asiatica HOM05D003231 ORTHO05D003865 7.3e-07 57.8 86 38.4
CARHR238990 Cardamine hirsuta HOM05D003231 ORTHO05D003865 9.6e-07 57.4 96 39.6
HanXRQChr15g0494411 Helianthus annuus HOM05D003231 ORTHO05D003865 1.3e-06 57.0 89 34.8
CARHR117760 Cardamine hirsuta HOM05D003231 ORTHO05D003865 1.6e-06 56.6 95 36.8
BcaC01g01114 Brassica carinata HOM05D003231 ORTHO05D003865 2.1e-06 56.2 96 36.5
C03p88290 Brassica napus HOM05D003231 ORTHO05D003865 2.1e-06 56.2 96 36.5
BolC3t21138H Brassica oleracea HOM05D003231 ORTHO05D003865 2.1e-06 56.2 96 36.5
Ca_15680_v3 Cicer arietinum L. HOM05D003231 ORTHO05D003865 2.1e-06 56.2 69 42.0
MBI16_g23305_MAGBIO Magnolia biondii HOM05D003231 ORTHO05D003865 2.1e-06 56.2 93 37.6
AUR62032666 Chenopodium quinoa HOM05D003231 ORTHO05D003865 2.8e-06 55.8 93 38.7
HanXRQChr10g0304871 Helianthus annuus HOM05D003231 ORTHO05D003865 2.8e-06 55.8 73 38.4
A08p18890 Brassica napus HOM05D003231 ORTHO05D003865 3.6e-06 55.5 96 39.6
BraA08t33850Z Brassica rapa HOM05D003231 ORTHO05D003865 3.6e-06 55.5 96 39.6
MBI18_g03888_MAGBIO Magnolia biondii HOM05D003231 ORTHO05D003865 3.6e-06 55.5 92 39.1
Psat5g025840 Pisum sativum HOM05D003231 ORTHO05D003865 4.8e-06 55.1 94 34.0
Hund24844 Selenicereus undatus HOM05D003231 ORTHO05D003865 4.8e-06 55.1 95 38.9
VMungo1309G1009 Vigna mungo HOM05D003231 ORTHO05D003865 4.8e-06 55.1 96 38.5
AUR62035301 Chenopodium quinoa HOM05D003231 ORTHO05D003865 6.2e-06 54.7 92 34.8
Ca_12882_v3 Cicer arietinum L. HOM05D003231 ORTHO05D003865 6.2e-06 54.7 95 33.7
Migut.K00422 Erythranthe guttata HOM05D003231 ORTHO05D003865 6.2e-06 54.7 93 34.4
Hund19250 Selenicereus undatus HOM05D003231 ORTHO05D003865 6.2e-06 54.7 93 39.8


User provided reference genes

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