Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.2e-93 346.7 197 100.0
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 8.2e-34 147.9 120 63.3
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 3.8e-31 139.0 130 56.9
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 2.0e-27 126.7 137 49.6
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.3e-27 125.9 145 46.9
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 4.3e-27 125.6 141 45.4
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 9.7e-27 124.4 136 51.5
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.4e-25 120.6 130 50.0
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 4.1e-25 119.0 146 49.3
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.6e-24 116.3 130 50.0
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 4.5e-24 115.5 152 46.1
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 4.5e-24 115.5 137 48.9
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 5.9e-24 115.2 146 46.6
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-23 114.0 136 47.1
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.3e-23 114.0 136 47.1
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 2.9e-23 112.8 138 42.0
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.8e-23 112.5 136 46.3
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 1.4e-22 110.5 143 46.2
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.5e-22 109.8 149 45.0
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.2e-22 109.4 148 44.6
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 9.4e-22 107.8 132 48.5
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-21 107.1 134 49.3
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 2.7e-21 106.3 137 43.1
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 2.7e-21 106.3 130 46.9
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 1.4e-20 104.0 150 42.7
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 1.8e-20 103.6 145 42.1
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 2.3e-20 103.2 138 47.1
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 6.7e-20 101.7 137 44.5
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.1e-19 100.9 134 44.0
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-19 100.9 142 45.1
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.1e-19 100.9 145 42.8
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.5e-19 100.5 142 44.4
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 1.5e-19 100.5 147 42.9
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 2.6e-19 99.8 121 48.8
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 5.7e-19 98.6 142 43.7
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 7.4e-19 98.2 132 44.7
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 7.4e-19 98.2 148 45.3
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 2.8e-18 96.3 142 41.5
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 2.8e-18 96.3 136 41.2
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 6.3e-18 95.1 135 43.0
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 6.3e-18 95.1 128 42.2
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 8.2e-18 94.7 144 39.6
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.8e-17 93.6 140 42.9
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 2.4e-17 93.2 141 39.0
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 4.1e-17 92.4 140 42.1
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 9.1e-17 91.3 129 41.1
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 9.1e-17 91.3 128 42.2
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.2e-16 90.9 134 46.3
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.5e-16 90.5 141 40.4
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 7.7e-16 88.2 113 45.1
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 2.2e-15 86.7 132 42.4
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 2.9e-15 86.3 139 42.4
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 3.8e-15 85.9 135 40.7
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.5e-14 84.0 139 39.6
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.9e-14 83.6 142 44.4
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 2.5e-14 83.2 126 42.1
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 2.5e-14 83.2 137 36.5
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.2e-14 82.8 132 42.4
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.2e-14 82.8 137 36.5
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.2e-14 82.8 132 42.4
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.2e-14 82.4 135 41.5
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 5.5e-14 82.0 134 43.3
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 9.4e-14 81.3 101 45.5
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 9.4e-14 81.3 144 41.0
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.2e-13 80.9 144 36.1
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.6e-13 80.5 146 37.0
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.6e-13 79.3 138 35.5
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 3.6e-13 79.3 162 37.0
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.7e-13 79.0 128 40.6
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.7e-13 79.0 138 35.5
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 4.7e-13 79.0 135 35.6
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.0e-13 78.2 132 40.2
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.4e-12 77.4 163 35.0
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.8e-12 77.0 132 39.4
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.3e-12 76.6 132 40.9
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.0e-12 76.3 163 35.0
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.0e-12 76.3 136 37.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 3.0e-12 76.3 151 37.1
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 3.9e-12 75.9 145 40.0
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 5.2e-12 75.5 162 34.6
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 5.2e-12 75.5 163 35.0
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 6.7e-12 75.1 166 33.7
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 8.8e-12 74.7 138 37.7
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.1e-11 74.3 162 34.0
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 2.0e-11 73.6 135 38.5
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 2.0e-11 73.6 106 45.3
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 2.6e-11 73.2 128 39.1
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.3e-11 72.8 136 37.5
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 4.4e-11 72.4 136 35.3
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 7.4e-11 71.6 129 34.9
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 9.7e-11 71.2 127 36.2
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 9.7e-11 71.2 150 37.3
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 9.7e-11 71.2 140 39.3
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 1.3e-10 70.9 131 36.6
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 1.7e-10 70.5 143 36.4
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.7e-10 70.5 128 35.9
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 2.2e-10 70.1 130 36.9
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 2.8e-10 69.7 129 38.0
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 4.8e-10 68.9 129 38.8
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 6.3e-10 68.6 94 41.5
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.1e-09 67.8 163 33.7
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.1e-09 67.8 112 39.3
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 1.1e-09 67.8 138 35.5
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.8e-09 67.0 143 35.0
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 1.8e-09 67.0 129 36.4
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 3.1e-09 66.2 151 33.8
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 4.1e-09 65.9 135 34.8
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 5.3e-09 65.5 138 34.8
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 7.0e-09 65.1 141 30.5
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 7.0e-09 65.1 102 41.2
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-08 63.9 140 34.3
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.0e-08 63.5 120 40.8
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 4.5e-08 62.4 138 35.5
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 7.7e-08 61.6 136 32.4
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.0e-07 61.2 144 36.1
Phvul.009G074000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.3e-07 60.8 121 35.5
CsaV3_4G035270 Cucumis sativus L. HOM05D029900 ORTHO05D005146 1.7e-07 60.5 88 42.0
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 1.7e-07 60.5 136 36.8
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 2.2e-07 60.1 142 35.9
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.2e-07 60.1 123 40.7
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.2e-07 60.1 125 32.0
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.2e-07 60.1 139 36.7
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.9e-07 59.7 118 38.1
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.9e-07 59.7 141 32.6
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 2.9e-07 59.7 133 33.1
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 5.0e-07 58.9 125 32.0
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 5.0e-07 58.9 143 32.2
Lj5g0011909 Lotus japonicus HOM05D014755 ORTHO05D005146 8.5e-07 58.2 112 33.0
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 1.5e-06 57.4 77 39.0
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.5e-06 57.4 142 28.2
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.5e-06 56.6 138 31.9
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 2.5e-06 56.6 94 34.0
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.5e-06 56.6 127 37.0
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.2e-06 55.8 130 31.5
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 4.2e-06 55.8 151 27.8
Phvul.001G030900 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 5.5e-06 55.5 120 34.2
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 9.4e-06 54.7 131 32.8


User provided reference genes

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