Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23038 Davidia involucrata HOM05D000793 ORTHO05D000783 5.0e-64 247.7 131 100.0
Dinv39132 Davidia involucrata HOM05D001099 ORTHO05D000958 6.0e-17 91.3 65 73.8
MSTRG.9926 Avicennia marina HOM05D000793 ORTHO05D000783 2.8e-14 82.4 59 71.2
Manes.03G169200 Manihot esculenta HOM05D000793 ORTHO05D000783 2.8e-14 82.4 59 71.2
Potri.010G077100 Populus trichocarpa HOM05D000793 ORTHO05D000783 8.2e-14 80.9 59 69.5
HanXRQChr14g0456821 Helianthus annuus HOM05D000793 ORTHO05D000783 1.1e-13 80.5 58 67.2
Dinv29915 Davidia involucrata HOM05D000793 ORTHO05D000783 1.4e-13 80.1 59 69.5
FAN25G2669 Fragaria x ananassa HOM05D000793 ORTHO05D000783 1.4e-13 80.1 59 66.1
GSVIVG01018109001 Vitis vinifera HOM05D000793 ORTHO05D000783 1.8e-13 79.7 58 69.0
Eucgr.H00197 Eucalyptus grandis HOM05D000793 ORTHO05D000783 2.4e-13 79.3 62 62.9
Eucgr.J01564 Eucalyptus grandis HOM05D000793 ORTHO05D000783 2.4e-13 79.3 62 62.9
CiPaw.02G116700 Carya illinoinensis HOM05D000793 ORTHO05D000783 3.1e-13 79.0 59 67.8
Haze_11296 Corylus avellana HOM05D000793 ORTHO05D000783 3.1e-13 79.0 59 66.1
Actinidia40089 Actinidia chinensis HOM05D000793 ORTHO05D000783 4.1e-13 78.6 58 69.0
Glyma.20G205000 Glycine max HOM05D000793 ORTHO05D000783 4.1e-13 78.6 62 61.3
TAR365G0170 Trochodendron aralioides HOM05D000793 ORTHO05D000783 4.1e-13 78.6 58 67.2
Sabra10G0031700 Salix brachista HOM05D000793 ORTHO05D000783 5.3e-13 78.2 59 66.1
Cfa008381 Carpinus fangiana HOM05D000793 ORTHO05D000783 6.9e-13 77.8 59 64.4
FAN16G0160 Fragaria x ananassa HOM05D000793 ORTHO05D000783 6.9e-13 77.8 59 64.4
FAN21G1412 Fragaria x ananassa HOM05D000793 ORTHO05D000783 6.9e-13 77.8 59 64.4
Rhsim04G0190700 Rhododendron simsii HOM05D000793 ORTHO05D000783 6.9e-13 77.8 108 43.5
ECA240G2568 Erigeron canadensis HOM05D000793 ORTHO05D000783 9.0e-13 77.4 58 63.8
Gohir.A08G014500 Gossypium hirsutum HOM05D000793 ORTHO05D000783 9.0e-13 77.4 57 66.7
Gohir.D08G025100 Gossypium hirsutum HOM05D000793 ORTHO05D000783 9.0e-13 77.4 57 66.7
Gorai.004G020400 Gossypium raimondii HOM05D000793 ORTHO05D000783 9.0e-13 77.4 57 66.7
QL04p076845 Quercus lobata HOM05D000793 ORTHO05D000783 9.0e-13 77.4 59 64.4
TPR.G28900 Trifolium pratense HOM05D000793 ORTHO05D000783 9.0e-13 77.4 59 61.0
vmacro08409 Vaccinium macrocarpon HOM05D000793 ORTHO05D000783 9.0e-13 77.4 59 64.4
MD13G1206700 Malus domestica HOM05D000793 ORTHO05D000783 1.2e-12 77.0 59 64.4
MD16G1208000 Malus domestica HOM05D000793 ORTHO05D000783 1.2e-12 77.0 59 64.4
Nn1g02592 Nelumbo nucifera HOM05D000793 ORTHO05D000783 1.2e-12 77.0 60 63.3
Psat6g134080 Pisum sativum HOM05D000793 ORTHO05D000783 1.2e-12 77.0 59 61.0
ClCG05G004630 Citrullus lanatus HOM05D000793 ORTHO05D000783 1.5e-12 76.6 59 62.7
MELO3C006472.2 Cucumis melo HOM05D000793 ORTHO05D000783 1.5e-12 76.6 59 62.7
FvH4_3g28120 Fragaria vesca HOM05D000793 ORTHO05D000783 1.5e-12 76.6 59 62.7
FAN11G0224 Fragaria x ananassa HOM05D000793 ORTHO05D000783 1.5e-12 76.6 59 62.7
Lj5g0018581 Lotus japonicus HOM05D000793 ORTHO05D000783 1.5e-12 76.6 59 62.7
Medtr1g075190 Medicago truncatula HOM05D000793 ORTHO05D000783 1.5e-12 76.6 59 59.3
Medtr1g475240 Medicago truncatula HOM05D000793 ORTHO05D000783 1.5e-12 76.6 59 59.3
Peaxi162Scf00813g00124 Petunia axillaris HOM05D000793 ORTHO05D000783 1.5e-12 76.6 58 67.2
RcHm_v2.0_Chr5g0050811 Rosa chinensis HOM05D000793 ORTHO05D000783 1.5e-12 76.6 59 62.7
SGA_v2.0_scaffold88G27292 Striga asiatica HOM05D000793 ORTHO05D000783 1.5e-12 76.6 62 59.7
CAN.G1007.16 Capsicum annuum HOM05D000793 ORTHO05D000783 2.0e-12 76.3 55 70.9
Glyma.10G185400 Glycine max HOM05D000793 ORTHO05D000783 2.0e-12 76.3 62 59.7
Lj6A656T66 Lonicera japonica HOM05D000793 ORTHO05D000783 2.0e-12 76.3 57 66.7
Ca_09834_v3 Cicer arietinum L. HOM05D000793 ORTHO05D000783 2.6e-12 75.9 59 62.7
Prupe.1G030300 Prunus persica HOM05D000793 ORTHO05D000783 2.6e-12 75.9 59 62.7
Sed0024219 Sechium edule HOM05D000793 ORTHO05D000783 2.6e-12 75.9 60 60.0
Thecc.04G245700 Theobroma cacao HOM05D000793 ORTHO05D000783 2.6e-12 75.9 59 61.0
unitig_736.g22447 Utricularia gibba HOM05D000793 ORTHO05D000783 2.6e-12 75.9 56 69.6
Lalb_Chr21g0312301 Lupinus albus HOM05D000793 ORTHO05D000783 3.4e-12 75.5 59 61.0
VMungo0720G2345 Vigna mungo HOM05D000793 ORTHO05D000783 3.4e-12 75.5 62 59.7
CSS0014340 Camellia sinensis var. sinensis HOM05D000793 ORTHO05D000783 4.5e-12 75.1 59 64.4
CSS0047894 Camellia sinensis var. sinensis HOM05D000793 ORTHO05D000783 4.5e-12 75.1 59 64.4
Cc03_g04810 Coffea canephora HOM05D000793 ORTHO05D000783 4.5e-12 75.1 58 65.5
Hma1.2p1_0893F.1_g233490 Hydrangea macrophylla HOM05D000793 ORTHO05D000783 4.5e-12 75.1 58 67.2
Lsat_1_v5_gn_3_125561 Lactuca sativa HOM05D000793 ORTHO05D000783 4.5e-12 75.1 58 63.8
Nitab4.5_0000525g0170 Nicotiana tabacum HOM05D000793 ORTHO05D000783 4.5e-12 75.1 55 69.1
Oeu002607.1 Olea europaea HOM05D000793 ORTHO05D000783 4.5e-12 75.1 108 41.7
PGSC0003DMG400001131 Solanum tuberosum HOM05D000793 ORTHO05D000783 4.5e-12 75.1 58 65.5
DCAR_027273 Daucus carota HOM05D000793 ORTHO05D000783 5.9e-12 74.7 56 66.1
Phvul.007G126200 Phaseolus vulgaris HOM05D000793 ORTHO05D000783 5.9e-12 74.7 62 58.1
TWI73G0586 Tripterygium wilfordii HOM05D000793 ORTHO05D000783 5.9e-12 74.7 59 61.0
HPP92_007957 Vanilla planifolia HOM05D000793 ORTHO05D000783 5.9e-12 74.7 82 46.3
Ciclev10004262m.g Citrus clementina HOM05D000793 ORTHO05D000783 7.6e-12 74.3 59 62.7
CsaV3_3G012610 Cucumis sativus L. HOM05D000793 ORTHO05D000783 7.6e-12 74.3 59 61.0
SalBow2G1802 Salvia bowleyana HOM05D000793 ORTHO05D000783 7.6e-12 74.3 55 65.5
Gorai.011G170900 Gossypium raimondii HOM05D000793 ORTHO05D000783 1.0e-11 73.9 57 63.2
Sc15g0003220 Simmondsia chinensis HOM05D000793 ORTHO05D000783 1.0e-11 73.9 59 64.4
Solyc09g083350.3 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.3e-11 73.6 55 67.3
Sopen09g032270 Solanum pennellii HOM05D000793 ORTHO05D000783 1.3e-11 73.6 55 67.3
Migut.G00432 Erythranthe guttata HOM05D000793 ORTHO05D000783 1.7e-11 73.2 57 63.2
PSO210G3130 Papaver somniferum HOM05D000793 ORTHO05D000783 1.7e-11 73.2 59 61.0
PSO832G2886 Papaver somniferum HOM05D000793 ORTHO05D000783 1.7e-11 73.2 59 61.0
arahy.Tifrunner.gnm1.ann1.48H374 Arachis hypogaea HOM05D000793 ORTHO05D000783 2.2e-11 72.8 80 53.8
arahy.Tifrunner.gnm1.ann1.N116BS Arachis hypogaea HOM05D000793 ORTHO05D000783 2.2e-11 72.8 80 53.8
CDE06G0996 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 2.2e-11 72.8 60 58.3
Aa31LG8G9550 Aethionema arabicum HOM05D000793 ORTHO05D000783 2.9e-11 72.4 59 57.6
MBI04_g39241_MAGBIO Magnolia biondii HOM05D000793 ORTHO05D000783 2.9e-11 72.4 59 59.3
PGR031G0096 Punica granatum HOM05D000793 ORTHO05D000783 2.9e-11 72.4 60 60.0
Sp7g12590 Schrenkiella parvula HOM05D000793 ORTHO05D000783 2.9e-11 72.4 59 59.3
Atru.chr4.2234 Acer truncatum HOM05D000793 ORTHO05D000783 3.8e-11 72.0 59 59.3
CARHR220730 Cardamine hirsuta HOM05D000793 ORTHO05D000783 3.8e-11 72.0 56 62.5
AL7G41620 Arabidopsis lyrata HOM05D000793 ORTHO05D000783 6.5e-11 71.2 59 57.6
arahy.Tifrunner.gnm1.ann1.DRKS4E Arachis hypogaea HOM05D000793 ORTHO05D000783 6.5e-11 71.2 80 51.2
Thhalv10024373m.g Eutrema salsugineum HOM05D000793 ORTHO05D000783 6.5e-11 71.2 59 59.3
THA.LOC104808594 Tarenaya hassleriana HOM05D000793 ORTHO05D000783 1.1e-10 70.5 59 61.0
Cpa.g.sc58.44 Carica papaya HOM05D000793 ORTHO05D000783 1.4e-10 70.1 61 60.7
CDE02G2232 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 1.4e-10 70.1 60 56.7
ATR0665G619 Amborella trichopoda HOM05D000793 ORTHO05D000783 1.9e-10 69.7 60 56.7
Aqoxy5G00328 Aquilegia oxysepala HOM05D000793 ORTHO05D000783 1.9e-10 69.7 60 56.7
AT4G14510 Arabidopsis thaliana HOM05D000793 ORTHO05D000783 1.9e-10 69.7 59 55.9
BcaNung00364 Brassica carinata HOM05D000793 ORTHO05D000783 1.9e-10 69.7 56 60.7
A01p23220 Brassica napus HOM05D000793 ORTHO05D000783 1.9e-10 69.7 56 60.7
BraA01t02232Z Brassica rapa HOM05D000793 ORTHO05D000783 1.9e-10 69.7 56 60.7
AUR62020876 Chenopodium quinoa HOM05D000793 ORTHO05D000783 1.9e-10 69.7 70 55.7
AUR62029546 Chenopodium quinoa HOM05D000793 ORTHO05D000783 1.9e-10 69.7 70 55.7
Nitab4.5_0004798g0060 Nicotiana tabacum HOM05D000793 ORTHO05D000783 1.9e-10 69.7 55 65.5
Aa31LG9G2790 Aethionema arabicum HOM05D000793 ORTHO05D000783 2.5e-10 69.3 59 57.6
BcaC09g50113 Brassica carinata HOM05D000793 ORTHO05D000783 2.5e-10 69.3 56 58.9
C01p28860 Brassica napus HOM05D000793 ORTHO05D000783 2.5e-10 69.3 56 58.9
BolC1t02814H Brassica oleracea HOM05D000793 ORTHO05D000783 2.5e-10 69.3 56 58.9
CANSAT78G1000 Cannabis sativa HOM05D000793 ORTHO05D000783 2.5e-10 69.3 58 55.2
Carub.0003s2324 Capsella rubella HOM05D000793 ORTHO05D000783 4.2e-10 68.6 59 55.9
Carub.0007s2771 Capsella rubella HOM05D000793 ORTHO05D000783 4.2e-10 68.6 59 59.3
AL3G37510 Arabidopsis lyrata HOM05D000793 ORTHO05D000783 5.5e-10 68.2 59 55.9
COL.COLO4_15785 Corchorus olitorius HOM05D000793 ORTHO05D000783 5.5e-10 68.2 59 55.9
Sp3g20750 Schrenkiella parvula HOM05D000793 ORTHO05D000783 5.5e-10 68.2 59 54.2
Hund06719 Selenicereus undatus HOM05D000793 ORTHO05D000783 5.5e-10 68.2 61 57.4
EL10Ac3g07441 Beta vulgaris HOM05D000793 ORTHO05D000783 7.2e-10 67.8 59 57.6
PSO210G4498 Papaver somniferum HOM05D000793 ORTHO05D000783 7.2e-10 67.8 76 46.1
AT3G23070 Arabidopsis thaliana HOM05D000793 ORTHO05D000783 9.3e-10 67.4 59 54.2
Thhalv10006820m.g Eutrema salsugineum HOM05D000793 ORTHO05D000783 1.2e-09 67.0 59 55.9
CARHR098980 Cardamine hirsuta HOM05D000793 ORTHO05D000783 1.6e-09 66.6 59 55.9
BcaC05g27977 Brassica carinata HOM05D000793 ORTHO05D000783 2.1e-09 66.2 59 50.8
C05p39830 Brassica napus HOM05D000793 ORTHO05D000783 2.1e-09 66.2 59 50.8
BolC5t32728H Brassica oleracea HOM05D000793 ORTHO05D000783 2.1e-09 66.2 59 50.8
BraA05t21443Z Brassica rapa HOM05D000793 ORTHO05D000783 3.5e-09 65.5 59 50.8
Thhalv10020286m.g Eutrema salsugineum HOM05D000793 ORTHO05D000783 3.5e-09 65.5 59 54.2
MBI04_g31735_MAGBIO Magnolia biondii HOM05D000793 ORTHO05D000783 3.5e-09 65.5 106 35.8
MBI04_g41988_MAGBIO Magnolia biondii HOM05D000793 ORTHO05D000783 3.5e-09 65.5 106 35.8
PSO210G1825 Papaver somniferum HOM05D000793 ORTHO05D000783 1.0e-08 63.9 76 43.4
Nn6g35499 Nelumbo nucifera HOM05D000793 ORTHO05D000783 1.3e-08 63.5 60 50.0
Ah.04g149500 Amaranthus hybridus HOM05D000793 ORTHO05D000783 1.8e-08 63.2 55 56.4
SEGI_35875 Sequoiadendron giganteum HOM05D000793 ORTHO05D000783 1.8e-08 63.2 59 50.8
Os11g0592400 Oryza sativa ssp. japonica HOM05D000793 ORTHO05D000783 3.0e-08 62.4 56 57.1
BcaB06g26431 Brassica carinata HOM05D000793 ORTHO05D000783 3.9e-08 62.0 56 50.0
BcaB06g26436 Brassica carinata HOM05D000793 ORTHO05D000783 3.9e-08 62.0 56 50.0
A05p25610 Brassica napus HOM05D000793 ORTHO05D000783 3.9e-08 62.0 56 50.0
Aqoxy7G04018 Aquilegia oxysepala HOM05D000793 ORTHO05D000783 5.1e-08 61.6 82 36.6
Zm00001eb310960 Zea mays HOM05D000793 ORTHO05D000783 6.7e-08 61.2 60 50.0
Zm00001eb114780 Zea mays HOM05D000793 ORTHO05D000783 8.7e-08 60.8 56 53.6
ATR0796G092 Amborella trichopoda HOM05D000793 ORTHO05D000783 1.9e-07 59.7 59 44.1
BolC8t50697H Brassica oleracea HOM05D000793 ORTHO05D024548 2.5e-07 59.3 62 45.2
Dinv42325 Davidia involucrata HOM05D000793 ORTHO05D000783 2.5e-07 59.3 58 53.4
Oeu006015.1 Olea europaea HOM05D000793 ORTHO05D000783 2.5e-07 59.3 60 45.0
Oeu006016.1 Olea europaea HOM05D000793 ORTHO05D000783 2.5e-07 59.3 60 45.0
SGA_v2.0_scaffold62G21619 Striga asiatica HOM05D000793 ORTHO05D000783 2.5e-07 59.3 56 53.6
TAR636G0599 Trochodendron aralioides HOM05D000793 ORTHO05D000783 4.3e-07 58.5 57 47.4
Migut.J00639 Erythranthe guttata HOM05D000793 ORTHO05D000783 5.7e-07 58.2 58 48.3
Sabra03G0075700 Salix brachista HOM05D001099 ORTHO05D000958 5.7e-07 58.2 57 56.1
CDE04G1243 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 7.4e-07 57.8 58 46.6
Os09g0363100 Oryza sativa ssp. japonica HOM05D000793 ORTHO05D000783 7.4e-07 57.8 58 48.3
Lsat_1_v5_gn_3_481 Lactuca sativa HOM05D001099 ORTHO05D000958 9.7e-07 57.4 73 46.6
Nitab4.5_0010634g0020 Nicotiana tabacum HOM05D000793 ORTHO05D000783 9.7e-07 57.4 56 50.0
MSTRG.20119 Avicennia marina HOM05D000793 ORTHO05D000783 1.3e-06 57.0 59 49.2
Solyc07g039500.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.3e-06 57.0 56 51.8
GSVIVG01015193001 Vitis vinifera HOM05D000793 ORTHO05D000783 1.3e-06 57.0 58 48.3
ECA240G1483 Erigeron canadensis HOM05D001099 ORTHO05D000958 1.6e-06 56.6 78 39.7
Lalb_Chr12g0199831 Lupinus albus HOM05D000793 ORTHO05D000783 1.6e-06 56.6 84 40.5
Nn6g33979 Nelumbo nucifera HOM05D001099 ORTHO05D000958 1.6e-06 56.6 57 50.9
Atru.chr7.1609 Acer truncatum HOM05D000793 ORTHO05D000783 2.2e-06 56.2 58 50.0
Glyma.17G054400 Glycine max HOM05D000793 ORTHO05D000783 2.2e-06 56.2 60 46.7
HanXRQChr03g0088611 Helianthus annuus HOM05D001099 ORTHO05D000958 2.2e-06 56.2 57 49.1
DCAR_017082 Daucus carota HOM05D000793 ORTHO05D000783 2.8e-06 55.8 56 48.2
Medtr0004s0510 Medicago truncatula HOM05D001099 ORTHO05D000958 2.8e-06 55.8 62 46.8
RcHm_v2.0_Chr7g0203041 Rosa chinensis HOM05D001099 ORTHO05D000958 2.8e-06 55.8 59 50.8
Potri.003G109200 Populus trichocarpa HOM05D001099 ORTHO05D000958 3.7e-06 55.5 57 52.6
Sopen07g019080 Solanum pennellii HOM05D000793 ORTHO05D000783 3.7e-06 55.5 56 50.0
PGSC0003DMG401022041 Solanum tuberosum HOM05D000793 ORTHO05D000783 3.7e-06 55.5 52 55.8
VMungo1127G1536 Vigna mungo HOM05D001099 ORTHO05D000958 3.7e-06 55.5 61 49.2
Eucgr.C00880 Eucalyptus grandis HOM05D000793 ORTHO05D000783 4.8e-06 55.1 109 33.9
Eucgr.L02271 Eucalyptus grandis HOM05D000793 ORTHO05D000783 4.8e-06 55.1 107 33.6
Nitab4.5_0010540g0010 Nicotiana tabacum HOM05D000793 ORTHO05D000783 4.8e-06 55.1 56 48.2
Sabra06G0117800 Salix brachista HOM05D000793 ORTHO05D000783 4.8e-06 55.1 106 29.2
Cfa003074 Carpinus fangiana HOM05D000793 ORTHO05D000783 6.3e-06 54.7 80 36.2
HanXRQChr04g0126201 Helianthus annuus HOM05D000793 ORTHO05D000783 6.3e-06 54.7 58 43.1
TPR.G20264 Trifolium pratense HOM05D001099 ORTHO05D000958 6.3e-06 54.7 64 42.2
CAN.G57.28 Capsicum annuum HOM05D000793 ORTHO05D000783 8.2e-06 54.3 54 50.0
CiPaw.04G148700 Carya illinoinensis HOM05D000793 ORTHO05D000783 8.2e-06 54.3 80 36.2
Ca_19626_v3 Cicer arietinum L. HOM05D001099 ORTHO05D000958 8.2e-06 54.3 62 45.2
Cc06_g11490 Coffea canephora HOM05D000793 ORTHO05D000783 8.2e-06 54.3 56 50.0
Lj2P216T41 Lonicera japonica HOM05D001099 ORTHO05D000958 8.2e-06 54.3 57 49.1
Peaxi162Scf00221g00078 Petunia axillaris HOM05D000793 ORTHO05D000783 8.2e-06 54.3 78 43.6
Psat4g015360 Pisum sativum HOM05D000793 ORTHO05D000783 8.2e-06 54.3 60 41.7
Prupe.7G208300 Prunus persica HOM05D000793 ORTHO05D000783 8.2e-06 54.3 60 45.0
TWI81G0609 Tripterygium wilfordii HOM05D001099 ORTHO05D000958 8.2e-06 54.3 57 49.1
TAR375G0093 Trochodendron aralioides HOM05D001099 ORTHO05D000958 8.2e-06 54.3 57 49.1
unitig_22.g6045 Utricularia gibba HOM05D000793 ORTHO05D000783 8.2e-06 54.3 49 53.1


User provided reference genes

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