Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 5.3e-105 384.4 200 100.0
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.5e-30 137.1 172 51.7
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 4.4e-27 125.6 175 53.7
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 2.2e-26 123.2 171 49.1
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.1e-25 120.9 158 53.2
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 1.4e-25 120.6 161 49.7
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 1.4e-25 120.6 159 54.7
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 1.9e-25 120.2 175 48.6
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 3.2e-25 119.4 165 51.5
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 4.1e-25 119.0 179 53.1
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 5.4e-25 118.6 177 49.2
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.6e-24 117.1 137 52.6
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 2.0e-24 116.7 153 54.9
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 3.5e-24 115.9 144 49.3
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.5e-22 110.5 174 49.4
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 1.6e-21 107.1 156 51.3
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 2.8e-21 106.3 172 46.5
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 1.1e-20 104.4 161 47.2
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 3.1e-20 102.8 101 56.4
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 3.1e-20 102.8 65 76.9
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 4.0e-20 102.4 149 51.0
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 4.0e-20 102.4 163 43.6
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 8.9e-20 101.3 184 42.4
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.2e-19 100.9 65 73.8
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 3.4e-19 99.4 208 38.5
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.4e-19 99.0 142 45.1
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 5.8e-19 98.6 212 38.2
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 7.5e-19 98.2 137 43.8
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.9e-18 96.3 142 44.4
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 6.4e-18 95.1 142 45.8
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 8.3e-18 94.7 213 41.3
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-17 94.4 151 42.4
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 1.4e-17 94.0 138 46.4
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 1.9e-17 93.6 151 43.0
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 1.9e-17 93.6 181 38.7
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 2.4e-17 93.2 142 43.7
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.4e-17 93.2 142 43.7
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 3.2e-17 92.8 150 44.0
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 3.2e-17 92.8 142 43.7
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 4.1e-17 92.4 176 41.5
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.2e-16 90.9 169 37.9
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 1.6e-16 90.5 158 42.4
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 2.1e-16 90.1 142 40.8
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 2.1e-16 90.1 162 47.5
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.7e-16 89.7 160 38.8
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 2.7e-16 89.7 105 55.2
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 3.5e-16 89.4 149 43.0
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 4.6e-16 89.0 141 44.7
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 4.6e-16 89.0 207 36.2
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 7.8e-16 88.2 204 38.7
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.0e-15 87.8 149 38.9
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 1.0e-15 87.8 142 43.7
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 1.3e-15 87.4 152 40.8
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.3e-15 87.4 164 39.0
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 1.3e-15 87.4 188 37.8
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 1.7e-15 87.0 178 39.9
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 2.3e-15 86.7 175 44.6
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 5.1e-15 85.5 180 41.1
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 5.1e-15 85.5 141 42.6
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.1e-15 85.5 85 55.3
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 5.1e-15 85.5 88 54.5
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 6.6e-15 85.1 150 43.3
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 1.1e-14 84.3 165 38.2
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 3.3e-14 82.8 199 35.7
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 3.3e-14 82.8 145 44.1
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 4.3e-14 82.4 192 36.5
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 5.6e-14 82.0 206 38.8
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 9.5e-14 81.3 183 41.0
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 9.5e-14 81.3 107 46.7
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.2e-13 80.9 87 55.2
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.2e-13 80.9 145 42.8
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 2.1e-13 80.1 95 47.4
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.1e-13 80.1 136 40.4
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 2.1e-13 80.1 137 42.3
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 2.1e-13 80.1 225 36.9
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 2.1e-13 80.1 92 52.2
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 4.7e-13 79.0 124 43.5
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 6.2e-13 78.6 136 39.7
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 8.1e-13 78.2 84 54.8
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 8.1e-13 78.2 140 43.6
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 1.1e-12 77.8 144 40.3
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 1.1e-12 77.8 146 38.4
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 1.1e-12 77.8 110 48.2
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 1.4e-12 77.4 139 36.7
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.4e-12 77.4 136 41.9
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.4e-12 77.4 80 55.0
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 2.4e-12 76.6 144 42.4
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 3.1e-12 76.3 74 56.8
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 3.1e-12 76.3 99 45.5
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 3.1e-12 76.3 71 60.6
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 4.0e-12 75.9 165 37.0
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 5.2e-12 75.5 187 33.7
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 6.8e-12 75.1 189 39.2
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 6.8e-12 75.1 137 39.4
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.5e-11 73.9 212 34.9
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 2.0e-11 73.6 190 34.2
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 2.6e-11 73.2 146 39.7
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.6e-11 73.2 155 38.7
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 5.8e-11 72.0 56 67.9
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 7.6e-11 71.6 114 43.0
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.3e-10 70.9 156 36.5
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 1.7e-10 70.5 212 36.3
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 3.8e-10 69.3 87 50.6
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 8.4e-10 68.2 102 44.1
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 8.4e-10 68.2 102 46.1
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 1.9e-09 67.0 139 38.8
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 2.4e-09 66.6 153 36.6
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 3.2e-09 66.2 65 55.4
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.2e-09 66.2 55 60.0
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 4.1e-09 65.9 89 44.9
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 4.1e-09 65.9 152 36.2
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 5.4e-09 65.5 88 45.5
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 5.4e-09 65.5 55 65.5
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 7.1e-09 65.1 65 52.3
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 7.1e-09 65.1 65 52.3
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 7.1e-09 65.1 65 52.3
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 7.1e-09 65.1 65 52.3
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 7.1e-09 65.1 65 52.3
Nitab4.5_0016059g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 7.1e-09 65.1 125 40.0
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 7.1e-09 65.1 62 51.6
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 9.2e-09 64.7 156 32.7
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 1.2e-08 64.3 58 58.6
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 1.2e-08 64.3 129 38.8
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 1.6e-08 63.9 171 31.0
Psat2g172120 Pisum sativum HOM05D005432 ORTHO05D004599 2.1e-08 63.5 55 61.8
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 2.7e-08 63.2 116 40.5
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 3.5e-08 62.8 163 33.1
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.5e-08 62.8 164 34.1
Oeu021446.1 Olea europaea HOM05D005432 ORTHO05D004599 6.0e-08 62.0 150 36.7
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.0e-07 61.2 88 44.3
MBI16_g16466_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 1.0e-07 61.2 67 50.7
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 1.3e-07 60.8 68 51.5
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 1.7e-07 60.5 84 44.0
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 1.7e-07 60.5 169 33.1
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 2.3e-07 60.1 68 51.5
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 2.3e-07 60.1 66 48.5
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 2.3e-07 60.1 73 47.9
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 2.3e-07 60.1 169 30.8
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 2.3e-07 60.1 85 43.5
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 3.0e-07 59.7 68 50.0
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 3.9e-07 59.3 66 48.5
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 3.9e-07 59.3 66 48.5
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 5.1e-07 58.9 88 43.2
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 5.1e-07 58.9 76 46.1
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 5.1e-07 58.9 52 57.7
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 5.1e-07 58.9 154 33.8
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 6.6e-07 58.5 53 54.7
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 1.5e-06 57.4 105 35.2
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.9e-06 57.0 71 46.5
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 2.5e-06 56.6 87 39.1
arahy.Tifrunner.gnm1.ann1.0M6NCC Arachis hypogaea HOM05D005432 ORTHO05D004599 4.3e-06 55.8 51 51.0
Sed0015961 Sechium edule HOM05D005432 ORTHO05D004599 5.6e-06 55.5 57 56.1
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 7.3e-06 55.1 97 41.2
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 9.6e-06 54.7 80 41.2
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 9.6e-06 54.7 80 41.2


User provided reference genes

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