Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 9.7e-52 206.5 99 100.0
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 7.5e-44 180.3 92 91.3
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 7.5e-44 180.3 92 91.3
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 9.8e-44 179.9 92 90.2
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 9.8e-44 179.9 93 92.5
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 2.2e-43 178.7 92 89.1
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.8e-43 178.3 92 90.2
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 3.7e-43 177.9 93 92.5
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 4.8e-43 177.6 93 90.3
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 4.8e-43 177.6 92 91.3
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 6.3e-43 177.2 92 89.1
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 6.3e-43 177.2 93 90.3
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 8.3e-43 176.8 93 90.3
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 8.3e-43 176.8 93 90.3
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 8.3e-43 176.8 93 91.4
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.4e-42 176.0 93 89.2
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.4e-42 176.0 93 89.2
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.8e-42 175.6 93 89.2
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 1.8e-42 175.6 93 89.2
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 2.4e-42 175.3 92 88.0
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 2.4e-42 175.3 92 88.0
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 3.1e-42 174.9 93 90.3
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 3.1e-42 174.9 93 90.3
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 3.1e-42 174.9 93 90.3
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 3.1e-42 174.9 93 90.3
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 3.1e-42 174.9 93 90.3
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 3.1e-42 174.9 93 90.3
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 5.4e-42 174.1 93 89.2
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 5.4e-42 174.1 93 89.2
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 5.4e-42 174.1 93 89.2
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 5.4e-42 174.1 93 89.2
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 7.0e-42 173.7 93 88.2
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 87.1
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 88.2
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 88.2
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 88.2
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 89.2
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 89.2
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 89.2
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 89.2
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.1e-42 173.3 93 89.2
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 9.1e-42 173.3 92 85.9
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 9.1e-42 173.3 91 89.0
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.2e-41 172.9 93 89.2
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 1.2e-41 172.9 93 88.2
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 1.2e-41 172.9 93 89.2
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.2e-41 172.9 93 88.2
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.2e-41 172.9 93 89.2
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.6e-41 172.6 93 89.2
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.6e-41 172.6 93 88.2
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.6e-41 172.6 93 88.2
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 1.6e-41 172.6 94 89.4
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 1.6e-41 172.6 93 88.2
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.6e-41 172.6 93 88.2
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 1.6e-41 172.6 93 88.2
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.0e-41 172.2 93 89.2
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.7e-41 171.8 94 87.2
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 2.7e-41 171.8 93 88.2
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 2.7e-41 171.8 93 87.1
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.7e-41 171.8 94 87.2
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.7e-41 171.8 94 87.2
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 3.5e-41 171.4 93 88.2
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 3.5e-41 171.4 93 88.2
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 3.5e-41 171.4 93 87.1
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 3.5e-41 171.4 93 88.2
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 4.5e-41 171.0 93 88.2
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 4.5e-41 171.0 92 85.9
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 4.5e-41 171.0 93 88.2
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 4.5e-41 171.0 93 89.2
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 5.9e-41 170.6 93 89.2
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 5.9e-41 170.6 93 88.2
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 5.9e-41 170.6 91 83.5
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.7e-41 170.2 93 87.1
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 7.7e-41 170.2 93 87.1
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 7.7e-41 170.2 93 87.1
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 7.7e-41 170.2 93 88.2
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 7.7e-41 170.2 93 88.2
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 7.7e-41 170.2 93 88.2
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.0e-40 169.9 93 88.2
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 1.0e-40 169.9 93 87.1
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.0e-40 169.9 93 84.9
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.0e-40 169.9 93 87.1
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.0e-40 169.9 93 87.1
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.3e-40 169.5 91 87.9
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.3e-40 169.5 93 87.1
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.3e-40 169.5 93 86.0
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 1.3e-40 169.5 93 86.0
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 1.7e-40 169.1 93 87.1
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.7e-40 169.1 93 87.1
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.7e-40 169.1 93 87.1
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.7e-40 169.1 93 87.1
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.7e-40 169.1 93 87.1
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 1.7e-40 169.1 93 86.0
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.7e-40 169.1 93 86.0
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.7e-40 169.1 92 85.9
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 2.3e-40 168.7 94 85.1
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 2.3e-40 168.7 94 85.1
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 2.3e-40 168.7 93 86.0
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 2.3e-40 168.7 94 85.1
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 2.3e-40 168.7 92 82.6
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 2.9e-40 168.3 93 84.9
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.9e-40 168.3 93 86.0
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.8e-40 167.9 93 87.1
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 3.8e-40 167.9 93 86.0
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 3.8e-40 167.9 93 86.0
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 3.8e-40 167.9 93 86.0
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 3.8e-40 167.9 93 86.0
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 5.0e-40 167.5 92 79.3
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 5.0e-40 167.5 94 85.1
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 6.5e-40 167.2 93 86.0
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 6.5e-40 167.2 92 80.4
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 6.5e-40 167.2 93 86.0
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.1e-39 166.4 95 85.3
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 1.1e-39 166.4 95 84.2
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 1.5e-39 166.0 93 83.9
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 1.5e-39 166.0 94 84.0
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 1.5e-39 166.0 94 84.0
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 1.9e-39 165.6 93 83.9
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 2.5e-39 165.2 93 84.9
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 2.5e-39 165.2 93 84.9
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.5e-39 165.2 92 82.6
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 3.2e-39 164.9 93 86.0
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 3.2e-39 164.9 93 86.0
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 4.2e-39 164.5 93 83.9
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 4.2e-39 164.5 93 83.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 7.2e-39 163.7 90 81.1
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 7.2e-39 163.7 96 83.3
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.6e-38 162.5 96 82.3
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 2.8e-38 161.8 93 79.6
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 8.0e-38 160.2 82 89.0
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.8e-37 159.1 94 79.8
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.4e-34 149.4 86 81.4
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 1.7e-27 125.9 109 62.4
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.6e-25 119.4 64 85.9
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 5.9e-25 117.5 71 78.9
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 2.3e-24 115.5 96 55.2
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 2.5e-23 112.1 88 63.6
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 9.5e-23 110.2 80 60.0
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 7.3e-15 84.0 44 86.4
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 8.1e-14 80.5 43 86.0
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.0e-12 75.9 43 81.4
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 8.3e-11 70.5 40 82.5
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.2e-10 68.6 102 36.3
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 5.6e-07 57.8 74 44.6
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.1e-06 55.8 31 80.6
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.6e-06 55.1 29 79.3


User provided reference genes

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