Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22930 Davidia involucrata HOM05D000504 ORTHO05D000403 1.7e-45 185.7 92 100.0
Dinv28533 Davidia involucrata HOM05D000504 ORTHO05D000403 3.8e-26 121.3 91 70.3
CSS0031659 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 6.5e-26 120.6 93 68.8
Lj8C36T7 Lonicera japonica HOM05D000504 ORTHO05D000403 6.5e-26 120.6 90 73.3
DCAR_020221 Daucus carota HOM05D000504 ORTHO05D000403 8.5e-26 120.2 91 70.3
Hma1.2p1_0099F.1_g048910 Hydrangea macrophylla HOM05D000504 ORTHO05D000403 9.4e-25 116.7 88 71.6
CiPaw.04G063500 Carya illinoinensis HOM05D000504 ORTHO05D000403 2.8e-21 105.1 90 58.9
Eucgr.A02875 Eucalyptus grandis HOM05D000504 ORTHO05D000403 4.8e-21 104.4 87 62.1
QL12p039468 Quercus lobata HOM05D000504 ORTHO05D000403 8.3e-21 103.6 90 60.0
PGR042G0372 Punica granatum HOM05D000504 ORTHO05D000403 1.1e-20 103.2 90 60.0
TAR374G0403 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.4e-20 102.1 90 64.4
DCAR_018126 Daucus carota HOM05D000504 ORTHO05D000403 3.1e-20 101.7 92 64.1
Nn1g01216 Nelumbo nucifera HOM05D000504 ORTHO05D000403 3.1e-20 101.7 91 61.5
Nitab4.5_0000072g0390 Nicotiana tabacum HOM05D000504 ORTHO05D000403 3.5e-19 98.2 88 58.0
TWI39G1058 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 3.5e-19 98.2 86 62.8
Potri.015G131400 Populus trichocarpa HOM05D000504 ORTHO05D000403 4.5e-19 97.8 90 57.8
Rhsim09G0193700 Rhododendron simsii HOM05D000504 ORTHO05D000403 1.0e-18 96.7 74 66.2
vmacro09885 Vaccinium macrocarpon HOM05D000504 ORTHO05D000403 1.0e-18 96.7 75 68.0
Potri.012G129600 Populus trichocarpa HOM05D000504 ORTHO05D000403 1.3e-18 96.3 90 58.9
CSS0015341 Camellia sinensis var. sinensis HOM05D000504 ORTHO05D000403 1.7e-18 95.9 76 68.4
Nitab4.5_0014314g0010 Nicotiana tabacum HOM05D000504 ORTHO05D000403 1.7e-18 95.9 88 56.8
TAR375G0909 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.9e-18 95.1 92 59.8
GSVIVG01018512001 Vitis vinifera HOM05D000504 ORTHO05D000403 5.0e-18 94.4 90 58.9
Oeu042585.1 Olea europaea HOM05D000504 ORTHO05D000403 1.5e-17 92.8 91 60.4
PGSC0003DMG400031025 Solanum tuberosum HOM05D000504 ORTHO05D000403 1.5e-17 92.8 99 52.5
CiPaw.03G097200 Carya illinoinensis HOM05D000504 ORTHO05D000403 1.9e-17 92.4 91 54.9
MD07G1257900 Malus domestica HOM05D000504 ORTHO05D000403 2.5e-17 92.0 90 56.7
Aqoxy7G00611 Aquilegia oxysepala HOM05D000504 ORTHO05D000403 9.5e-17 90.1 90 62.2
Cpa.g.sc3.270 Carica papaya HOM05D000504 ORTHO05D000403 9.5e-17 90.1 90 55.6
Sabra15G0144500 Salix brachista HOM05D000504 ORTHO05D000403 9.5e-17 90.1 100 52.0
Gohir.D09G045300 Gossypium hirsutum HOM05D000504 ORTHO05D000403 1.6e-16 89.4 87 56.3
Gohir.A09G044000 Gossypium hirsutum HOM05D000504 ORTHO05D000403 2.1e-16 89.0 87 56.3
Gorai.006G065100 Gossypium raimondii HOM05D000504 ORTHO05D000403 2.1e-16 89.0 87 56.3
Peaxi162Scf01372g00031 Petunia axillaris HOM05D000504 ORTHO05D000403 3.6e-16 88.2 89 56.2
DCAR_009434 Daucus carota HOM05D000504 ORTHO05D000403 4.7e-16 87.8 89 53.9
Duzib068G1114 Durio zibethinus HOM05D000504 ORTHO05D000403 4.7e-16 87.8 87 54.0
TWI23G0479 Tripterygium wilfordii HOM05D000504 ORTHO05D000403 4.7e-16 87.8 90 56.7
Lj1A984T87 Lonicera japonica HOM05D000504 ORTHO05D000403 6.1e-16 87.4 62 72.6
PGSC0003DMG400027381 Solanum tuberosum HOM05D000504 ORTHO05D000403 8.0e-16 87.0 90 58.9
Ciclev10004422m.g Citrus clementina HOM05D000504 ORTHO05D000403 1.0e-15 86.7 87 57.5
Migut.F00430 Erythranthe guttata HOM05D000504 ORTHO05D000403 1.4e-15 86.3 92 54.3
Psat6g112680 Pisum sativum HOM05D000504 ORTHO05D000403 1.4e-15 86.3 90 55.6
Cfa008233 Carpinus fangiana HOM05D000504 ORTHO05D000403 2.3e-15 85.5 90 56.7
Duzib205G0098 Durio zibethinus HOM05D000504 ORTHO05D000403 2.3e-15 85.5 87 51.7
Manes.14G174000 Manihot esculenta HOM05D000504 ORTHO05D000403 4.0e-15 84.7 91 48.4
Solyc11g072280.3 Solanum lycopersicum HOM05D000504 ORTHO05D000403 4.0e-15 84.7 90 57.8
Sopen11g029950 Solanum pennellii HOM05D000504 ORTHO05D000403 4.0e-15 84.7 90 57.8
CAN.G1022.2 Capsicum annuum HOM05D000504 ORTHO05D000403 5.2e-15 84.3 99 47.5
Ciclev10027898m.g Citrus clementina HOM05D000504 ORTHO05D000403 8.8e-15 83.6 88 54.5
Duzib084G1278 Durio zibethinus HOM05D000504 ORTHO05D000403 8.8e-15 83.6 86 51.2
Manes.13G078039 Manihot esculenta HOM05D000504 ORTHO05D000403 8.8e-15 83.6 74 62.2
Nitab4.5_0000205g0160 Nicotiana tabacum HOM05D000504 ORTHO05D000403 8.8e-15 83.6 90 57.8
MD01G1185800 Malus domestica HOM05D000504 ORTHO05D000403 1.2e-14 83.2 92 54.3
Nitab4.5_0001589g0030 Nicotiana tabacum HOM05D000504 ORTHO05D000403 1.2e-14 83.2 90 56.7
Gohir.D07G043500 Gossypium hirsutum HOM05D000504 ORTHO05D000403 2.0e-14 82.4 90 52.2
Gohir.A07G039300 Gossypium hirsutum HOM05D000504 ORTHO05D000403 3.4e-14 81.6 90 52.2
Thecc.03G161600 Theobroma cacao HOM05D000504 ORTHO05D000403 3.4e-14 81.6 87 54.0
CAN.G1187.6 Capsicum annuum HOM05D000504 ORTHO05D000403 4.4e-14 81.3 90 53.3
Glyma.10G178100 Glycine max HOM05D000504 ORTHO05D000403 4.4e-14 81.3 90 55.6
Gorai.001G046500 Gossypium raimondii HOM05D000504 ORTHO05D000403 4.4e-14 81.3 90 51.1
Solyc03g007130.4 Solanum lycopersicum HOM05D000504 ORTHO05D000403 5.7e-14 80.9 99 51.5
Cc02_g03890 Coffea canephora HOM05D000504 ORTHO05D000403 9.8e-14 80.1 63 65.1
ECA233G0370 Erigeron canadensis HOM05D000504 ORTHO05D000403 9.8e-14 80.1 88 54.5
Lalb_Chr02g0149941 Lupinus albus HOM05D000504 ORTHO05D000403 9.8e-14 80.1 90 55.6
Atru.chr1.633 Acer truncatum HOM05D000504 ORTHO05D000403 1.7e-13 79.3 90 55.6
Lsat_1_v5_gn_8_8160 Lactuca sativa HOM05D000504 ORTHO05D000403 1.7e-13 79.3 90 56.7
MSTRG.8801 Avicennia marina HOM05D000504 ORTHO05D000403 2.2e-13 79.0 89 55.1
Ca_09892_v3 Cicer arietinum L. HOM05D000504 ORTHO05D000403 3.7e-13 78.2 90 52.2
Sopen03g003120 Solanum pennellii HOM05D000504 ORTHO05D000403 3.7e-13 78.2 99 50.5
Phvul.007G111500 Phaseolus vulgaris HOM05D000504 ORTHO05D000403 4.9e-13 77.8 90 53.3
arahy.Tifrunner.gnm1.ann1.L32ZBM Arachis hypogaea HOM05D000504 ORTHO05D000403 6.3e-13 77.4 90 50.0
Haze_13822 Corylus avellana HOM05D000504 ORTHO05D000403 6.3e-13 77.4 90 53.3
Lalb_Chr06g0168911 Lupinus albus HOM05D000504 ORTHO05D000403 6.3e-13 77.4 90 53.3
Nn3g20405 Nelumbo nucifera HOM05D000504 ORTHO05D000403 6.3e-13 77.4 90 51.1
SGA_v2.0_scaffold2G01137 Striga asiatica HOM05D000504 ORTHO05D000403 6.3e-13 77.4 88 53.4
HanXRQChr08g0224041 Helianthus annuus HOM05D000504 ORTHO05D000403 1.1e-12 76.6 88 55.7
Prupe.2G282400 Prunus persica HOM05D000504 ORTHO05D000403 1.1e-12 76.6 75 57.3
Peaxi162Scf00132g01312 Petunia axillaris HOM05D000504 ORTHO05D000403 1.4e-12 76.3 89 52.8
COL.COLO4_14181 Corchorus olitorius HOM05D000504 ORTHO05D000403 2.4e-12 75.5 87 50.6
Lj5g0027503 Lotus japonicus HOM05D000504 ORTHO05D000403 3.1e-12 75.1 90 50.0
VMungo0720G2133 Vigna mungo HOM05D000504 ORTHO05D000403 3.1e-12 75.1 90 52.2
ClCG05G007490 Citrullus lanatus HOM05D000504 ORTHO05D000403 7.0e-12 73.9 95 48.4
Medtr1g076700 Medicago truncatula HOM05D000504 ORTHO05D000403 7.0e-12 73.9 87 52.9
Sabra12G0097500 Salix brachista HOM05D000504 ORTHO05D000403 9.2e-12 73.6 90 47.8
Glyma.20G212100 Glycine max HOM05D000504 ORTHO05D000403 2.0e-11 72.4 91 52.7
Oeu022506.1 Olea europaea HOM05D000504 ORTHO05D000403 2.7e-11 72.0 87 51.7
SalBow4G0586 Salvia bowleyana HOM05D000504 ORTHO05D000403 3.5e-11 71.6 89 49.4
SalBow4G2565 Salvia bowleyana HOM05D000504 ORTHO05D000403 3.5e-11 71.6 89 49.4
THA.LOC104811509 Tarenaya hassleriana HOM05D000504 ORTHO05D000403 4.5e-11 71.2 84 48.8
unitig_0.g2496 Utricularia gibba HOM05D000504 ORTHO05D000403 5.9e-11 70.9 91 45.1
Sed0015124 Sechium edule HOM05D000504 ORTHO05D000403 1.0e-10 70.1 92 50.0
MSTRG.120 Avicennia marina HOM05D000504 ORTHO05D000403 1.7e-10 69.3 88 46.6
Sed0014513 Sechium edule HOM05D000504 ORTHO05D000403 1.7e-10 69.3 91 47.3
arahy.Tifrunner.gnm1.ann1.ASBV53 Arachis hypogaea HOM05D000504 ORTHO05D000403 5.0e-10 67.8 102 44.1
MELO3C006834.2 Cucumis melo HOM05D000504 ORTHO05D000403 5.0e-10 67.8 93 48.4
MBI04_g20745_MAGBIO Magnolia biondii HOM05D000504 ORTHO05D000403 6.6e-10 67.4 98 50.0
Sc19g0001860 Simmondsia chinensis HOM05D000504 ORTHO05D000403 1.9e-09 65.9 88 48.9
ATR0810G006 Amborella trichopoda HOM05D000504 ORTHO05D000403 2.5e-09 65.5 88 48.9
Eucgr.K00145 Eucalyptus grandis HOM05D000504 ORTHO05D000403 3.3e-09 65.1 89 46.1
ClCG01G005090 Citrullus lanatus HOM05D000504 ORTHO05D000403 7.3e-09 63.9 85 47.1
Migut.F01171 Erythranthe guttata HOM05D000504 ORTHO05D000403 7.3e-09 63.9 76 52.6
RcHm_v2.0_Chr1g0375141 Rosa chinensis HOM05D000504 ORTHO05D000403 7.3e-09 63.9 76 52.6
CsaV3_3G016350 Cucumis sativus L. HOM05D000504 ORTHO05D000403 1.2e-08 63.2 93 47.3
TPR.G16634 Trifolium pratense HOM05D000504 ORTHO05D000403 1.2e-08 63.2 82 48.8
SGA_v2.0_scaffold10G05468 Striga asiatica HOM05D000504 ORTHO05D000403 1.6e-08 62.8 88 46.6
TPR.G36327 Trifolium pratense HOM05D000504 ORTHO05D000403 1.6e-08 62.8 76 51.3
Oeu028173.1 Olea europaea HOM05D000504 ORTHO05D000403 3.6e-08 61.6 89 49.4
ECA232G0823 Erigeron canadensis HOM05D000504 ORTHO05D000403 6.1e-08 60.8 86 47.7
HanXRQChr03g0088491 Helianthus annuus HOM05D000504 ORTHO05D000403 8.0e-08 60.5 85 50.6
FvH4_7g28190 Fragaria vesca HOM05D000504 ORTHO05D000403 1.0e-07 60.1 81 51.9
FAN03G2257 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.0e-07 60.1 81 51.9
FAN03G2477 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.0e-07 60.1 81 51.9
FAN06G1705 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.0e-07 60.1 81 51.9
FAN06G4803 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.0e-07 60.1 81 51.9
FAN10G1369 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.0e-07 60.1 81 51.9
FAN10G2356 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.0e-07 60.1 81 51.9
Sed0000836 Sechium edule HOM05D000504 ORTHO05D000403 1.8e-07 59.3 84 46.4
PSO478G1947 Papaver somniferum HOM05D000504 ORTHO05D000403 4.0e-07 58.2 93 48.4
Carub.0008s1164 Capsella rubella HOM05D000504 ORTHO05D000403 8.9e-07 57.0 87 46.0
FAN01G0639 Fragaria x ananassa HOM05D000504 ORTHO05D000403 8.9e-07 57.0 81 49.4
Lalb_Chr19g0131301 Lupinus albus HOM05D000504 ORTHO05D000403 8.9e-07 57.0 82 43.9
Zm00001eb360520 Zea mays HOM05D000504 ORTHO05D000403 8.9e-07 57.0 90 46.7
THA.LOC104825073 Tarenaya hassleriana HOM05D000504 ORTHO05D000403 1.2e-06 56.6 84 44.0
Glyma.09G153500 Glycine max HOM05D000504 ORTHO05D000403 1.5e-06 56.2 87 46.0
Hund13374 Selenicereus undatus HOM05D000504 ORTHO05D000403 1.5e-06 56.2 88 43.2
Thhalv10012827m.g Eutrema salsugineum HOM05D000504 ORTHO05D000403 2.0e-06 55.8 88 45.5
Manes.05G044733 Manihot esculenta HOM05D000504 ORTHO05D000403 3.4e-06 55.1 85 44.7
Manes.05G044854 Manihot esculenta HOM05D000504 ORTHO05D000403 4.4e-06 54.7 85 44.7
AUR62005580 Chenopodium quinoa HOM05D000504 ORTHO05D000403 5.7e-06 54.3 77 44.2
PSO782G1378 Papaver somniferum HOM05D000504 ORTHO05D000403 5.7e-06 54.3 93 47.3
Aa31sc16G150 Aethionema arabicum HOM05D000504 ORTHO05D000403 9.8e-06 53.5 89 43.8
MSTRG.27169 Avicennia marina HOM05D000504 ORTHO05D000403 9.8e-06 53.5 90 43.3
CARHR264400 Cardamine hirsuta HOM05D000504 ORTHO05D000403 9.8e-06 53.5 84 47.6


User provided reference genes

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