Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 4.6e-53 211.1 115 100.0
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.3e-44 182.2 116 86.2
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.1e-42 175.6 116 84.5
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 3.1e-41 171.8 117 82.1
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.0e-40 169.1 115 79.1
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.4e-38 162.9 116 79.3
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.4e-38 162.9 116 75.9
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 7.1e-38 160.6 116 76.7
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 1.6e-37 159.5 114 76.3
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 2.1e-37 159.1 121 77.7
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.0e-36 156.8 116 75.0
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-36 155.6 120 75.0
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 3.9e-36 154.8 120 75.0
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.9e-36 154.8 120 75.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.9e-36 154.8 115 73.9
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 3.9e-36 154.8 120 72.5
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 6.7e-36 154.1 118 77.1
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.9e-35 152.5 116 76.7
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.3e-35 151.4 118 72.0
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.3e-35 151.4 117 72.6
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 5.6e-35 151.0 121 74.4
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 7.4e-35 150.6 118 72.0
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 7.4e-35 150.6 118 70.3
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 9.6e-35 150.2 116 71.6
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 9.6e-35 150.2 119 70.6
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 9.6e-35 150.2 115 72.2
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 9.6e-35 150.2 115 72.2
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 2.1e-34 149.1 117 73.5
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 2.8e-34 148.7 116 72.4
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 8.1e-34 147.1 118 72.9
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 8.1e-34 147.1 114 75.4
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.8e-33 146.0 115 70.4
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 2.4e-33 145.6 121 70.2
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 3.1e-33 145.2 118 72.9
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.1e-33 145.2 119 71.4
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.0e-33 144.8 117 69.2
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 6.9e-33 144.1 118 72.0
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 71.9
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 3.4e-32 141.7 118 68.6
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.5e-32 141.4 121 69.4
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 7.6e-32 140.6 121 68.6
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 70.0
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.3e-31 139.8 117 68.4
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.3e-31 139.8 117 70.1
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.7e-31 139.4 116 71.6
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 1.7e-31 139.4 112 70.5
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 2.2e-31 139.0 102 80.4
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 3.8e-31 138.3 124 69.4
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 3.8e-31 138.3 113 71.7
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 4.9e-31 137.9 114 71.1
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 4.9e-31 137.9 121 67.8
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 8.4e-31 137.1 125 68.0
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 3.2e-30 135.2 115 70.4
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 4.2e-30 134.8 123 68.3
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 5.5e-30 134.4 125 68.8
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 9.3e-30 133.7 120 63.3
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.6e-29 132.9 121 66.1
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.6e-29 132.9 117 70.9
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 2.1e-29 132.5 115 65.2
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.1e-29 132.5 119 68.9
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 2.7e-29 132.1 118 71.2
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.5e-29 131.7 117 70.1
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 3.5e-29 131.7 112 67.0
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.6e-29 131.3 117 64.1
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 7.9e-29 130.6 117 63.2
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 7.9e-29 130.6 121 65.3
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 7.9e-29 130.6 153 58.8
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 1.0e-28 130.2 121 67.8
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 1.0e-28 130.2 121 67.8
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.3e-28 129.8 115 69.6
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.3e-28 129.8 116 65.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 3.0e-28 128.6 121 64.5
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.9e-28 128.3 104 70.2
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 5.1e-28 127.9 120 68.3
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.1e-27 126.7 120 63.3
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.5e-27 126.3 129 65.9
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.5e-27 126.3 120 64.2
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.5e-27 126.3 120 65.8
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 4.3e-27 124.8 120 65.8
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 7.4e-27 124.0 119 64.7
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.3e-26 123.2 124 64.5
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 6.3e-26 120.9 120 63.3
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 6.3e-26 120.9 119 63.9
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.8e-25 119.4 121 61.2
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 2.4e-25 119.0 118 60.2
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 4.1e-25 118.2 114 63.2
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 6.9e-25 117.5 118 61.0
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.2e-24 116.7 121 62.0
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 2.6e-24 115.5 120 60.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 3.4e-24 115.2 115 62.6
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.3e-23 113.2 115 59.1
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 3.8e-23 111.7 115 58.3
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 5.0e-23 111.3 115 59.1
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.0e-23 111.3 120 58.3
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 8.4e-23 110.5 120 58.3
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 8.4e-23 110.5 118 56.8
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 1.1e-22 110.2 123 56.9
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 5.5e-22 107.8 119 55.5
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 7.2e-22 107.5 117 57.3
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 7.2e-22 107.5 119 57.1
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 9.3e-22 107.1 118 57.6
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.2e-21 106.7 111 56.8
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 1.2e-21 106.7 122 56.6
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.6e-21 106.3 111 55.9
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 2.1e-21 105.9 119 56.3
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 2.1e-21 105.9 119 56.3
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 2.1e-21 105.9 119 56.3
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.6e-21 104.8 69 82.6
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.6e-21 104.8 69 82.6
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 7.9e-21 104.0 118 58.5
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.0e-20 103.6 118 58.5
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.0e-20 103.6 118 58.5
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.0e-20 103.6 118 58.5
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.3e-20 102.4 116 56.0
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.3e-20 102.4 116 56.0
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.0e-20 102.1 84 67.9
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 5.1e-20 101.3 116 55.2
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.1e-20 101.3 82 72.0
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.1e-19 100.1 113 58.4
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.1e-19 100.1 112 58.9
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 4.3e-19 98.2 119 53.8
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 5.7e-19 97.8 118 54.2
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 9.7e-19 97.1 112 58.0
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.3e-18 96.7 70 75.7
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.6e-18 96.3 195 42.1
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.7e-18 95.1 120 52.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 6.3e-18 94.4 68 77.9
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 8.2e-18 94.0 87 64.4
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.1e-17 93.6 114 51.8
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 4.1e-17 91.7 123 53.7
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 2.2e-15 85.9 87 62.1
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 2.9e-15 85.5 87 60.9
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 4.2e-14 81.6 105 52.4
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 4.2e-14 81.6 81 60.5
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.1e-13 79.3 79 60.8
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.7e-13 79.0 113 46.0
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.9e-13 77.4 79 59.5
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 2.3e-12 75.9 71 63.4
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.3e-12 75.9 78 57.7
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 6.7e-12 74.3 83 54.2
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.8e-12 73.9 75 66.7
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.5e-11 73.2 101 50.5
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.5e-11 73.2 54 77.8
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.8e-09 66.2 115 41.7
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 2.6e-08 62.4 101 42.6
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 5.9e-08 61.2 45 64.4
Mapoly0044s0081 Marchantia polymorpha HOM05D004934 ORTHO05D005924 1.0e-07 60.5 80 51.2
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 2.9e-07 58.9 34 91.2
Rhsim01G0204800 Rhododendron simsii HOM05D002338 ORTHO05D006706 2.9e-07 58.9 58 62.1
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 3.2e-06 55.5 36 77.8


User provided reference genes

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