Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 1.2e-167 593.2 316 100.0
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 2.5e-77 293.1 183 77.6
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 5.3e-75 285.4 183 74.9
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 5.3e-75 285.4 184 72.8
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 9.0e-75 284.6 184 73.4
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 9.0e-75 284.6 183 74.9
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 1.2e-74 284.3 184 75.5
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 3.4e-74 282.7 182 75.3
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 9.9e-74 281.2 180 74.4
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.3e-73 280.8 182 74.7
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 1.7e-73 280.4 184 72.8
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 2.2e-73 280.0 184 73.4
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 2.2e-73 280.0 183 73.8
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 2.9e-73 279.6 178 76.4
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 2.9e-73 279.6 184 72.3
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 3.8e-73 279.3 184 73.4
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 4.9e-73 278.9 184 74.5
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 6.4e-73 278.5 181 72.9
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 8.4e-73 278.1 184 73.4
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 1.1e-72 277.7 181 72.9
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.4e-72 277.3 178 73.6
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 1.4e-72 277.3 180 70.6
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 1.4e-72 277.3 181 72.4
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 3.2e-72 276.2 182 74.2
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 9.3e-72 274.6 181 74.0
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.6e-71 273.9 182 72.5
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 2.1e-71 273.5 187 67.9
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 2.1e-71 273.5 187 67.9
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 2.7e-71 273.1 182 69.8
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 4.6e-71 272.3 182 71.4
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 4.6e-71 272.3 183 71.0
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 6.0e-71 271.9 184 70.1
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 7.9e-71 271.6 183 71.0
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 7.9e-71 271.6 184 72.3
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 1.3e-70 270.8 235 58.3
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.3e-70 270.8 184 71.2
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 3.0e-70 269.6 184 69.0
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 3.0e-70 269.6 184 69.0
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 3.0e-70 269.6 184 69.6
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 3.9e-70 269.2 182 70.3
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 5.1e-70 268.9 182 69.2
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 5.1e-70 268.9 182 73.1
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 8.7e-70 268.1 184 69.0
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.1e-69 267.7 181 69.6
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.5e-69 267.3 187 66.3
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.9e-69 266.9 180 69.4
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.9e-69 266.9 188 66.5
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.9e-69 266.9 187 66.8
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.5e-69 266.5 188 66.5
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 3.3e-69 266.2 183 69.9
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 4.3e-69 265.8 181 67.4
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 4.3e-69 265.8 181 70.2
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 4.3e-69 265.8 184 67.4
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 5.6e-69 265.4 182 69.2
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 9.6e-69 264.6 183 69.4
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.3e-68 264.2 184 69.0
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 2.1e-68 263.5 184 67.4
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 2.1e-68 263.5 184 67.4
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 2.1e-68 263.5 184 67.4
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.1e-68 263.5 182 67.0
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 2.1e-68 263.5 182 67.0
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.7e-68 262.7 179 67.6
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 4.8e-68 262.3 179 67.6
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 1.4e-67 260.8 168 75.0
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 1.4e-67 260.8 180 70.0
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 1.8e-67 260.4 183 69.4
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 3.1e-67 259.6 179 68.7
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 5.3e-67 258.8 183 68.3
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 6.9e-67 258.5 185 65.9
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 9.0e-67 258.1 180 66.1
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.2e-66 257.7 184 65.8
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.5e-66 257.3 179 68.2
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.0e-66 256.9 185 67.0
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 7.6e-66 255.0 174 67.2
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.0e-65 254.6 182 65.9
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 2.2e-65 253.4 185 64.9
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 3.8e-65 252.7 180 67.2
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.8e-65 252.7 180 65.6
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 3.8e-65 252.7 164 73.8
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.9e-65 252.3 180 64.4
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 4.9e-65 252.3 178 67.4
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 6.5e-65 251.9 176 69.3
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 6.5e-65 251.9 177 67.2
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.5e-64 250.0 179 63.7
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.5e-64 250.0 184 63.6
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.2e-64 249.6 188 62.8
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 3.2e-64 249.6 182 64.8
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 5.5e-64 248.8 183 63.4
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 2.7e-63 246.5 182 62.6
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 5.1e-62 242.3 178 64.0
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 6.7e-62 241.9 178 64.0
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 3.3e-61 239.6 182 64.3
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 9.6e-61 238.0 180 63.3
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 1.6e-60 237.3 178 64.0
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 3.7e-60 236.1 171 65.5
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 4.1e-59 232.6 189 60.3
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 2.6e-58 229.9 180 61.7
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.6e-58 229.9 181 60.2
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.5e-55 219.5 178 57.9
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 5.1e-54 215.7 194 56.7
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.5e-53 213.4 202 53.5
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.3e-53 212.6 201 53.2
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 7.4e-53 211.8 137 73.0
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 7.2e-48 195.3 175 54.3
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 3.0e-46 189.9 158 59.5
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 1.1e-45 188.0 158 58.9
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.7e-44 184.1 142 62.7
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 5.9e-42 175.6 106 73.6
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 2.3e-38 163.7 119 67.2
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 4.1e-35 152.9 107 71.0
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 3.8e-33 146.4 169 42.6
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 7.2e-32 142.1 191 40.8
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.6e-31 141.0 86 75.6
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 2.7e-31 140.2 178 41.0
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 8.0e-31 138.7 173 45.1
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.1e-29 134.8 181 39.8
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.1e-29 134.8 175 39.4
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.1e-27 126.3 95 60.0
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 5.3e-27 125.9 188 37.8
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 8.5e-25 118.6 170 37.1
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.2e-24 116.7 132 45.5
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 3.1e-19 100.1 75 62.7
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.5e-16 91.3 93 49.5
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 1.7e-09 67.8 188 28.2
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 2.3e-09 67.4 69 43.5
Prupe.7G229800 Prunus persica HOM05D003111 ORTHO05D003502 1.1e-08 65.1 170 24.1
ClCG06G008490 Citrullus lanatus HOM05D003111 ORTHO05D003502 3.6e-07 60.1 155 26.5
TWI18G0418 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 3.0e-06 57.0 139 26.6


User provided reference genes

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