Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 5.5e-110 401.0 203 100.0
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 8.0e-85 317.4 177 88.7
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 3.2e-73 278.9 181 78.5
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.7e-71 273.1 178 78.7
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 6.2e-69 264.6 184 75.0
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 2.9e-66 255.8 189 69.3
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 6.4e-66 254.6 177 73.4
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 3.2e-65 252.3 177 71.2
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 3.5e-64 248.8 179 72.6
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 3.0e-63 245.7 178 70.2
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 3.3e-62 242.3 177 69.5
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 7.3e-62 241.1 181 71.8
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 8.1e-61 237.7 183 67.8
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 1.2e-59 233.8 178 66.9
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 7.6e-59 231.1 178 66.9
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 9.9e-59 230.7 180 70.0
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.7e-58 229.9 177 65.5
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 2.4e-57 226.1 178 67.4
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 3.2e-57 225.7 173 67.6
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 3.2e-57 225.7 173 67.6
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 9.3e-57 224.2 173 67.6
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 1.2e-56 223.8 177 66.7
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.6e-56 223.4 173 67.1
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 4.6e-56 221.9 179 63.7
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 4.6e-56 221.9 181 66.9
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 4.6e-56 221.9 191 66.0
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 3.9e-55 218.8 179 67.6
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 5.1e-55 218.4 177 65.0
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 8.7e-55 217.6 177 63.8
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.5e-54 216.9 201 57.7
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.9e-54 216.5 178 62.4
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 3.3e-54 215.7 177 63.8
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 7.3e-54 214.5 177 65.5
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 9.6e-54 214.2 181 62.4
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 9.6e-54 214.2 173 63.6
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 3.6e-53 212.2 177 64.4
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.6e-53 212.2 181 64.1
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 6.2e-53 211.5 181 61.3
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 6.2e-53 211.5 181 61.3
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 1.4e-52 210.3 179 61.5
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 1.8e-52 209.9 179 62.6
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.8e-52 209.9 173 63.0
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.4e-52 209.5 178 62.4
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 2.4e-52 209.5 177 63.8
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.4e-52 209.5 178 62.9
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 3.1e-52 209.1 179 63.1
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 4.0e-52 208.8 177 63.8
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 6.9e-52 208.0 177 60.5
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 6.9e-52 208.0 183 62.3
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 1.2e-51 207.2 198 59.1
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.5e-51 206.8 180 60.6
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.5e-51 206.8 178 62.4
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 3.4e-51 205.7 177 61.0
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 5.8e-51 204.9 179 59.8
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 5.8e-51 204.9 182 59.3
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 5.8e-51 204.9 179 60.3
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 7.6e-51 204.5 181 63.0
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 2.9e-50 202.6 178 61.2
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 3.8e-50 202.2 181 63.5
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 3.8e-50 202.2 181 63.0
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 3.8e-50 202.2 178 60.7
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 8.4e-50 201.1 179 63.1
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.4e-49 200.3 176 61.4
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.9e-49 199.9 178 64.0
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.9e-49 199.9 171 63.2
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 2.4e-49 199.5 180 62.8
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 3.2e-49 199.1 173 60.1
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 1.2e-48 197.2 180 60.6
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 2.1e-48 196.4 172 61.6
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 2.7e-48 196.1 178 62.9
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 4.6e-48 195.3 177 57.1
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.3e-47 193.7 182 59.3
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 2.3e-47 193.0 178 57.3
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 3.9e-47 192.2 181 61.3
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 5.1e-47 191.8 183 57.9
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 8.7e-47 191.0 188 55.9
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 8.7e-47 191.0 182 58.2
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 1.5e-46 190.3 201 54.2
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 1.5e-46 190.3 177 57.1
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.9e-46 189.9 178 55.6
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 5.6e-46 188.3 179 54.7
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.6e-45 186.8 181 54.7
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.1e-44 184.1 180 56.7
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 5.3e-44 181.8 174 57.5
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 2.0e-43 179.9 180 56.7
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.6e-43 179.5 172 54.1
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 4.5e-43 178.7 177 54.8
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 3.8e-42 175.6 188 53.2
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.6e-40 170.2 184 50.5
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.1e-40 169.9 133 67.7
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 1.0e-39 167.5 185 51.9
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 6.7e-39 164.9 189 51.9
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 3.3e-38 162.5 177 48.0
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 9.6e-38 161.0 173 54.3
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.4e-36 157.1 184 51.6
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 3.1e-36 156.0 183 51.4
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.1e-36 156.0 192 49.0
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 5.3e-36 155.2 188 47.3
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.5e-35 153.7 170 46.5
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.6e-35 152.9 184 44.6
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 7.6e-35 151.4 173 49.7
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.2e-34 149.8 126 63.5
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 4.6e-32 142.1 179 47.5
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 6.0e-32 141.7 179 48.0
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 6.0e-32 141.7 123 60.2
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.8e-31 140.2 183 46.4
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 3.0e-31 139.4 127 63.0
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 3.0e-31 139.4 179 47.5
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 8.7e-31 137.9 169 48.5
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 8.7e-31 137.9 179 46.9
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 8.7e-31 137.9 179 46.9
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 8.7e-31 137.9 179 46.9
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.5e-30 137.1 179 47.5
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.5e-30 137.1 168 48.8
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 1.9e-30 136.7 174 47.7
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.9e-30 136.7 179 46.9
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 4.3e-30 135.6 171 46.2
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.3e-29 134.0 139 53.2
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 2.1e-29 133.3 179 45.8
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 2.8e-29 132.9 169 48.5
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 3.7e-29 132.5 118 55.9
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 6.3e-29 131.7 186 45.2
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 6.3e-29 131.7 179 44.1
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 8.2e-29 131.3 169 47.9
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-28 131.0 179 45.8
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 4.1e-28 129.0 176 47.7
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 4.5e-27 125.6 180 45.0
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 4.5e-27 125.6 171 45.6
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 7.6e-27 124.8 180 44.4
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 1.0e-26 124.4 174 45.4
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 2.9e-26 122.9 181 44.8
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.1e-25 120.9 174 44.8
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 1.4e-25 120.6 174 43.7
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.7e-24 116.3 111 63.1
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 3.9e-23 112.5 117 52.1
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 5.1e-23 112.1 155 45.2
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 6.7e-23 111.7 186 38.2
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 6.3e-21 105.1 102 62.7
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.0e-19 100.1 166 37.3
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 8.5e-18 94.7 193 34.2
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 3.3e-14 82.8 174 35.6
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 4.8e-13 79.0 68 60.3
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 4.1e-12 75.9 169 34.3
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 4.2e-09 65.9 221 30.3
unitig_0.g1474 Utricularia gibba HOM05D005110 ORTHO05D006074 3.3e-06 56.2 64 43.8


User provided reference genes

Program Settings