Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.1e-63 246.5 128 100.0
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.0e-24 117.1 78 79.5
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 1.4e-21 106.7 78 73.1
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.8e-21 106.3 78 73.1
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 3.0e-21 105.5 78 73.1
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 1.1e-20 103.6 78 70.5
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 5.7e-20 101.3 91 62.6
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 5.7e-20 101.3 91 61.5
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 5.7e-20 101.3 77 70.1
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 9.7e-20 100.5 91 57.1
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 9.7e-20 100.5 91 61.5
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 9.7e-20 100.5 91 61.5
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 9.7e-20 100.5 75 72.0
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.7e-19 99.8 91 62.6
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.7e-19 99.8 91 62.6
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 2.2e-19 99.4 91 60.4
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.2e-19 99.4 91 62.6
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 4.8e-19 98.2 91 59.3
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 8.2e-19 97.4 91 61.5
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 8.2e-19 97.4 91 60.4
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 1.1e-18 97.1 75 69.3
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 1.1e-18 97.1 75 69.3
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 2.4e-18 95.9 89 64.0
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 2.4e-18 95.9 91 59.3
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 5.3e-18 94.7 91 61.5
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 9.1e-18 94.0 78 64.1
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 2.6e-17 92.4 91 59.3
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 2.6e-17 92.4 91 56.0
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 3.5e-17 92.0 78 66.7
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 3.5e-17 92.0 78 64.1
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 4.5e-17 91.7 91 58.2
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 7.7e-17 90.9 81 64.2
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.0e-16 90.5 90 56.7
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 1.0e-16 90.5 78 62.8
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 1.7e-16 89.7 78 61.5
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 1.7e-16 89.7 78 61.5
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 2.2e-16 89.4 78 64.1
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.9e-16 89.0 91 57.1
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 2.9e-16 89.0 84 59.5
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.9e-16 89.0 91 56.0
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 6.5e-16 87.8 80 60.0
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 6.5e-16 87.8 91 57.1
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 8.5e-16 87.4 91 53.8
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.1e-15 87.0 72 66.7
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 1.1e-15 87.0 91 56.0
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 1.1e-15 87.0 78 62.8
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.5e-15 86.7 78 64.1
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.5e-15 86.7 84 59.5
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.9e-15 86.3 79 62.0
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.5e-15 85.9 91 54.9
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 2.5e-15 85.9 78 61.5
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 3.2e-15 85.5 78 61.5
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.2e-15 85.5 72 65.3
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 3.2e-15 85.5 91 58.2
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 4.2e-15 85.1 78 61.5
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 5.5e-15 84.7 78 60.3
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 5.5e-15 84.7 91 54.9
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 9.4e-15 84.0 80 61.2
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 9.4e-15 84.0 78 61.5
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.6e-14 83.2 86 54.7
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 2.7e-14 82.4 91 51.6
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 3.6e-14 82.0 84 56.0
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 4.7e-14 81.6 79 58.2
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 8.0e-14 80.9 80 58.8
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 8.0e-14 80.9 84 54.8
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.0e-14 80.9 84 54.8
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.0e-14 80.9 84 54.8
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.0e-14 80.9 84 54.8
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 8.0e-14 80.9 91 54.9
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.8e-13 79.7 80 58.8
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.8e-13 79.7 80 58.8
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 1.8e-13 79.7 80 57.5
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 2.3e-13 79.3 92 53.3
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 2.3e-13 79.3 107 48.6
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 2.3e-13 79.3 92 54.3
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.0e-13 79.0 89 55.1
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 3.0e-13 79.0 86 55.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 4.0e-13 78.6 77 61.0
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 4.0e-13 78.6 74 59.5
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 5.2e-13 78.2 78 57.7
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 5.2e-13 78.2 91 46.2
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 6.8e-13 77.8 80 57.5
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 6.8e-13 77.8 81 55.6
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 6.8e-13 77.8 81 60.5
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 6.8e-13 77.8 86 52.3
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 6.8e-13 77.8 82 54.9
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 8.8e-13 77.4 76 60.5
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 8.8e-13 77.4 92 52.2
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.2e-12 77.0 80 56.2
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.2e-12 77.0 87 49.4
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 1.2e-12 77.0 79 57.0
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 1.2e-12 77.0 91 45.1
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.5e-12 76.6 92 53.3
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 1.5e-12 76.6 92 52.2
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.5e-12 76.6 73 61.6
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.0e-12 76.3 73 61.6
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 2.6e-12 75.9 93 53.8
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 2.6e-12 75.9 92 51.1
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 2.6e-12 75.9 93 53.8
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 2.6e-12 75.9 92 51.1
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.6e-12 75.9 91 44.0
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.6e-12 75.9 91 44.0
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 2.6e-12 75.9 69 68.1
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 2.6e-12 75.9 91 51.6
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 3.4e-12 75.5 87 54.0
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.4e-12 75.5 91 52.7
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 4.4e-12 75.1 83 54.2
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.4e-12 75.1 86 52.3
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 4.4e-12 75.1 91 50.5
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 5.7e-12 74.7 82 56.1
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 5.7e-12 74.7 73 60.3
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 7.5e-12 74.3 92 52.2
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 9.8e-12 73.9 93 52.7
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 9.8e-12 73.9 93 52.7
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 9.8e-12 73.9 81 56.8
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 9.8e-12 73.9 83 50.6
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 1.3e-11 73.6 80 55.0
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.3e-11 73.6 73 58.9
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 1.7e-11 73.2 93 51.6
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 1.7e-11 73.2 91 50.5
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 1.7e-11 73.2 92 50.0
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 2.2e-11 72.8 91 50.5
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.2e-11 72.8 91 48.4
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.8e-11 72.4 91 49.5
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.7e-11 72.0 78 56.4
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.7e-11 72.0 85 54.1
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 4.8e-11 71.6 82 52.4
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 6.3e-11 71.2 92 50.0
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 6.3e-11 71.2 80 51.2
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 8.3e-11 70.9 73 57.5
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 1.1e-10 70.5 92 48.9
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 1.4e-10 70.1 111 44.1
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.4e-10 70.1 57 64.9
TPR.G23220 Trifolium pratense HOM05D003660 ORTHO05D003415 1.4e-10 70.1 62 67.7
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 1.8e-10 69.7 79 50.6
TPR.G4509 Trifolium pratense HOM05D003660 ORTHO05D003415 2.4e-10 69.3 59 66.1
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.1e-10 68.9 72 56.9
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 4.1e-10 68.6 53 69.8
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 5.4e-10 68.2 67 62.7
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 7.0e-10 67.8 86 47.7
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 9.1e-10 67.4 92 50.0
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.6e-09 66.6 71 47.9
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 2.7e-09 65.9 100 43.0
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 2.7e-09 65.9 78 47.4
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 2.7e-09 65.9 73 46.6
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 5.9e-09 64.7 93 49.5
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.0e-08 63.9 91 38.5
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.0e-08 63.9 91 38.5
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.0e-08 63.9 91 38.5
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 1.3e-08 63.5 58 55.2
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.3e-08 63.5 78 50.0
Haze_23336 Corylus avellana HOM05D003660 ORTHO05D003415 3.8e-08 62.0 47 68.1
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 5.0e-08 61.6 69 47.8
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 5.0e-08 61.6 91 42.9
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 8.5e-08 60.8 102 43.1
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 8.5e-08 60.8 102 43.1
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 8.5e-08 60.8 78 44.9
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 1.1e-07 60.5 86 43.0
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.5e-07 60.1 71 49.3
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 2.5e-07 59.3 62 45.2
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 9.4e-07 57.4 66 50.0
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.6e-06 56.6 72 50.0
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 2.7e-06 55.8 66 51.5
Sabra04G0135400 Salix brachista HOM05D003660 ORTHO05D003415 4.7e-06 55.1 48 60.4
A10p09210 Brassica napus HOM05D008756 ORTHO05D003415 8.0e-06 54.3 75 45.3
BolC9t59816H Brassica oleracea HOM05D008756 ORTHO05D003415 8.0e-06 54.3 67 49.3
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 8.0e-06 54.3 64 51.6
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 8.0e-06 54.3 62 43.5


User provided reference genes

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