Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 3.5e-291 1004.2 503 100.0
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 4.5e-161 572.0 485 65.2
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 9.8e-108 394.8 513 47.6
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.7e-107 394.0 513 47.6
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 6.2e-86 322.4 444 44.6
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.2e-84 318.2 490 41.8
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.7e-83 314.3 496 41.7
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 8.1e-78 295.4 496 42.3
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 3.5e-73 280.0 488 37.9
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 2.1e-70 270.8 494 37.7
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 4.2e-66 256.5 514 35.6
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 5.4e-66 256.1 516 38.0
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 9.3e-66 255.4 482 35.5
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 1.3e-64 251.5 510 35.5
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 3.0e-64 250.4 515 36.7
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 8.7e-64 248.8 541 34.4
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 6.2e-62 242.7 503 36.8
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 2.9e-59 233.8 505 36.8
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 4.9e-59 233.0 511 34.6
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 8.4e-59 232.3 509 34.4
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 1.4e-58 231.5 490 35.3
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 2.1e-57 227.6 500 36.2
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 4.6e-57 226.5 507 36.7
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 2.1e-54 217.6 408 35.5
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 1.1e-53 215.3 493 35.1
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 9.0e-53 212.2 506 31.6
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.5e-52 211.5 499 31.1
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 2.0e-52 211.1 500 35.0
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 2.1e-49 201.1 574 33.8
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 9.7e-47 192.2 350 39.4
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 1.1e-45 188.7 358 37.7
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 9.0e-45 185.7 343 37.9
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 2.0e-44 184.5 346 35.5
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.4e-42 178.3 465 29.7
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 3.6e-41 173.7 441 30.8
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 9.7e-39 165.6 481 30.8
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 2.4e-37 161.0 368 32.6
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 2.9e-35 154.1 457 30.2
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 1.1e-31 142.1 326 34.4
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 4.4e-31 140.2 325 34.2
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 4.4e-31 140.2 290 35.5
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 5.7e-31 139.8 451 31.5
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 7.4e-31 139.4 328 32.6
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 4.8e-30 136.7 435 29.2
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 1.4e-29 135.2 328 31.7
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 7.0e-29 132.9 289 33.9
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.2e-28 132.1 473 29.0
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 1.2e-28 132.1 290 34.1
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 2.0e-28 131.3 335 33.1
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 3.5e-28 130.6 322 33.9
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 4.5e-28 130.2 518 27.0
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 1.7e-27 128.3 313 32.6
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 3.8e-27 127.1 526 27.0
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.1e-26 125.6 415 29.9
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 1.1e-26 125.6 332 31.9
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 3.2e-26 124.0 349 31.5
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 3.2e-26 124.0 418 29.4
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 3.2e-26 124.0 516 25.6
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 5.5e-26 123.2 479 27.8
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 4.7e-25 120.2 341 32.0
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 6.1e-25 119.8 464 29.5
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 3.0e-24 117.5 326 33.7
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 2.6e-23 114.4 349 31.2
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 3.3e-23 114.0 464 27.8
Nitab4.5_0011467g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 1.3e-22 112.1 281 33.5
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 6.3e-22 109.8 490 26.9
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 1.6e-20 105.1 518 25.9
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 7.7e-20 102.8 337 32.0
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 2.9e-19 100.9 419 28.4
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 6.5e-19 99.8 442 29.2
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 1.1e-18 99.0 345 30.7
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 1.9e-18 98.2 458 26.4
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 9.4e-18 95.9 313 31.0
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 3.6e-17 94.0 434 26.3
Nitab4.5_0002598g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 3.6e-17 94.0 265 31.3
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 1.0e-16 92.4 333 26.4
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 4.0e-16 90.5 434 26.3
DCAR_023937 Daucus carota HOM05D008235 ORTHO05D009358 8.3e-14 82.8 145 34.5
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 1.1e-13 82.4 413 26.2
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 1.1e-13 82.4 413 26.2
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 1.1e-13 82.4 413 26.2
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 2.4e-13 81.3 307 29.0
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 2.4e-13 81.3 410 26.6
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 2.0e-12 78.2 159 36.5
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 2.7e-12 77.8 289 30.1
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 1.0e-11 75.9 383 25.6
Lsat_1_v5_gn_3_115581 Lactuca sativa HOM05D040109 ORTHO05D009358 1.7e-11 75.1 99 41.4
ECA240G1480 Erigeron canadensis HOM05D040109 ORTHO05D009358 5.0e-11 73.6 90 46.7
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 1.5e-10 72.0 271 28.0
HanXRQChr03g0091101 Helianthus annuus HOM05D040109 ORTHO05D009358 1.9e-10 71.6 145 33.8
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 7.2e-10 69.7 454 26.2
HPP92_002743 Vanilla planifolia HOM05D028297 ORTHO05D037162 4.0e-08 63.9 44 63.6
Duzib151G0752 Durio zibethinus HOM05D008235 ORTHO05D009358 6.8e-08 63.2 163 32.5
Phvul.005G153000 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 2.0e-07 61.6 91 44.0
PGSC0003DMG400007031 Solanum tuberosum HOM05D014650 ORTHO05D022197 1.7e-06 58.5 85 43.5


User provided reference genes

Program Settings