Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 3.1e-190 668.3 338 100.0
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.0e-185 653.3 338 96.4
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 6.2e-183 644.0 339 95.6
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.4e-182 642.1 332 97.3
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 2.4e-182 642.1 338 94.7
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 6.9e-182 640.6 338 94.1
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 2.6e-181 638.6 338 93.5
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 2.6e-181 638.6 338 94.7
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 5.8e-181 637.5 338 93.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.6e-181 637.1 338 93.5
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.0e-180 636.7 339 94.7
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.3e-180 636.3 336 94.3
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.3e-180 636.3 334 94.6
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.7e-180 636.0 338 93.8
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.9e-180 635.2 333 94.9
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 3.8e-180 634.8 338 93.2
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 4.9e-180 634.4 338 93.8
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 4.9e-180 634.4 335 93.4
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 6.5e-180 634.0 338 92.9
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 8.4e-180 633.6 338 93.2
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.4e-179 632.9 338 92.9
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 2.5e-179 632.1 339 92.9
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 4.2e-179 631.3 338 92.9
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 5.5e-179 630.9 339 93.2
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 7.1e-179 630.6 338 93.2
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 7.1e-179 630.6 338 92.0
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 7.1e-179 630.6 338 92.9
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 9.3e-179 630.2 338 92.6
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 9.3e-179 630.2 337 93.2
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 9.3e-179 630.2 338 92.3
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.2e-178 629.8 339 93.5
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.6e-178 629.4 338 92.6
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.6e-178 629.4 338 91.7
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.1e-178 629.0 339 92.6
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.7e-178 628.6 338 91.7
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 2.7e-178 628.6 339 93.2
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.7e-178 628.6 339 93.2
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 6.0e-178 627.5 339 92.9
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.0e-177 626.7 335 92.5
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.8e-177 625.9 338 92.0
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.0e-177 625.2 339 91.4
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 3.0e-177 625.2 339 93.5
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 8.7e-177 623.6 339 92.0
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.1e-176 623.2 338 92.3
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.1e-176 623.2 332 92.5
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 2.5e-176 622.1 338 91.7
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 3.3e-176 621.7 339 91.7
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 4.3e-176 621.3 338 91.7
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 5.7e-176 620.9 338 91.4
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 7.4e-176 620.5 338 91.4
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 7.4e-176 620.5 338 90.5
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 7.4e-176 620.5 339 91.4
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 2.8e-175 618.6 335 91.9
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 3.7e-175 618.2 338 90.2
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 3.7e-175 618.2 338 90.2
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 3.7e-175 618.2 338 90.2
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 3.7e-175 618.2 332 92.2
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 4.8e-175 617.8 332 92.2
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 8.2e-175 617.1 337 91.1
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 1.1e-174 616.7 338 90.2
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.4e-174 616.3 332 92.2
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.4e-174 615.5 339 90.6
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 3.1e-174 615.1 337 90.2
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 3.1e-174 615.1 325 95.1
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.1e-174 615.1 341 90.0
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 6.9e-174 614.0 339 90.3
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.9e-174 614.0 339 90.3
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.2e-173 613.2 338 89.3
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.5e-173 612.8 340 90.3
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 7.6e-173 610.5 340 89.4
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 7.6e-173 610.5 334 91.3
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 7.6e-173 610.5 333 90.4
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.0e-172 610.1 354 88.4
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.7e-172 609.4 338 92.3
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.7e-172 609.4 339 89.4
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.9e-172 608.6 335 89.6
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.4e-171 606.3 333 90.4
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.4e-171 606.3 338 88.5
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 3.2e-171 605.1 380 82.6
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 4.2e-171 604.7 327 93.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 5.5e-171 604.4 332 90.1
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.6e-170 602.8 337 88.7
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.0e-169 600.1 335 88.1
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 3.9e-169 598.2 338 85.8
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 6.7e-169 597.4 316 93.7
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 7.4e-168 594.0 335 86.9
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 9.7e-168 593.6 309 94.8
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 1.6e-167 592.8 319 92.5
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 6.3e-167 590.9 332 88.9
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.4e-166 589.7 336 86.6
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 3.1e-166 588.6 336 86.3
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 4.1e-166 588.2 336 86.6
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 5.3e-166 587.8 309 93.9
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.2e-165 586.6 336 85.4
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.6e-165 585.5 336 86.0
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 5.9e-165 584.3 336 85.7
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 5.9e-165 584.3 336 85.4
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 7.7e-165 583.9 337 85.2
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 7.7e-165 583.9 336 85.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.0e-164 583.6 319 89.7
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.0e-164 583.6 335 85.7
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.0e-164 583.6 335 85.7
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.7e-164 582.8 336 85.1
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.2e-164 582.4 335 85.1
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 2.2e-164 582.4 335 85.4
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.2e-164 582.4 335 85.4
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.9e-164 582.0 338 84.0
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.9e-164 582.0 320 90.3
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 5.0e-164 581.3 338 84.6
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 6.5e-164 580.9 336 85.1
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.1e-163 580.1 339 87.3
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 4.2e-163 578.2 337 84.3
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 2.1e-162 575.9 335 84.2
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.7e-162 575.5 327 85.3
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 2.7e-162 575.5 336 84.8
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 7.9e-162 573.9 351 81.8
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 5.1e-161 571.2 338 86.4
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 9.7e-160 567.0 343 81.9
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 4.8e-159 564.7 336 81.2
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 5.9e-157 557.8 332 80.1
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 5.0e-156 554.7 378 77.8
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 6.5e-156 554.3 420 71.9
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.9e-155 552.7 337 79.8
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 2.7e-154 548.9 316 85.1
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.0e-152 542.7 334 78.7
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.3e-152 542.0 334 78.4
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.6e-146 523.1 338 81.7
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 3.6e-146 521.9 363 74.4
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.0e-144 516.2 264 97.7
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 2.6e-144 515.8 271 94.1
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.8e-143 511.5 264 97.3
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.8e-143 511.5 264 97.3
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.0e-141 506.1 295 85.4
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 3.0e-137 492.3 320 74.4
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 8.8e-137 490.7 338 76.3
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.7e-135 485.3 338 75.7
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.2e-125 453.8 344 68.6
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 3.8e-124 448.7 238 92.0
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 5.7e-120 434.9 251 84.1
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 3.9e-116 422.2 311 64.3
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.1e-115 420.6 251 83.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 9.8e-112 407.5 216 92.1
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 6.4e-111 404.8 241 80.9
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 9.8e-104 380.9 317 58.4
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 3.7e-103 379.0 330 59.4
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 1.3e-55 221.1 128 85.2
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.6e-45 187.6 163 63.8
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.0e-35 154.1 180 54.4
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 2.6e-32 143.7 79 88.6
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 2.7e-29 133.7 80 81.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 2.6e-27 127.1 73 84.9
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.3e-26 124.8 74 82.4
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.1e-21 107.5 109 57.8
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.7e-16 90.5 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.1e-13 80.9 99 48.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 8.9e-12 75.5 42 81.0
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 1.5e-11 74.7 57 70.2
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.2e-10 70.9 60 63.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.2e-10 70.9 60 63.3
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 8.3e-10 68.9 100 43.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.1e-06 58.5 125 36.0


User provided reference genes

Program Settings