Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 0.0e+00 1397.5 727 100.0
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 2.3e-251 872.5 741 67.7
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.9e-161 573.2 722 50.3
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.3e-108 398.3 530 46.6
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 7.8e-106 389.0 615 41.8
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 1.5e-96 358.2 431 50.6
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 4.4e-93 346.7 541 42.7
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.7e-92 344.7 449 47.9
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.1e-91 342.0 375 53.3
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 5.4e-91 339.7 469 45.6
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 2.1e-90 337.8 522 42.9
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 7.3e-88 329.3 733 36.8
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 9.6e-88 328.9 776 36.6
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.0e-85 321.2 430 47.0
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.7e-84 318.2 740 36.1
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 4.9e-84 316.6 736 35.5
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 4.2e-83 313.5 504 42.3
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 4.2e-83 313.5 763 35.5
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 9.3e-83 312.4 735 36.5
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.7e-82 310.8 434 45.6
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 2.3e-81 307.8 462 43.5
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 7.3e-80 302.8 902 31.6
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.3e-79 302.0 353 50.4
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 4.8e-79 300.1 562 39.3
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-77 295.4 427 44.0
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 2.6e-77 294.3 704 34.5
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 7.6e-77 292.7 476 43.7
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.7e-76 291.6 482 42.9
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 2.2e-76 291.2 428 43.9
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.9e-75 288.1 676 36.8
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.0e-73 282.3 523 40.3
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.5e-72 277.7 521 40.1
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.5e-72 277.7 523 40.3
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 4.3e-72 276.9 349 48.1
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 7.3e-72 276.2 437 43.2
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 7.3e-72 276.2 267 59.6
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 9.6e-72 275.8 340 47.9
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 2.8e-71 274.2 476 43.7
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 9.9e-69 265.8 313 47.3
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 4.2e-67 260.4 346 45.1
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 5.4e-67 260.0 439 42.8
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 9.3e-67 259.2 420 44.0
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.8e-65 255.0 678 32.3
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 3.9e-65 253.8 419 43.0
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 8.7e-65 252.7 441 42.6
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.9e-64 251.5 329 47.1
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 3.3e-64 250.8 259 57.9
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 5.6e-64 250.0 722 32.0
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 9.6e-64 249.2 445 41.6
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 1.8e-62 245.0 393 42.2
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 4.0e-62 243.8 333 45.6
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 4.0e-62 243.8 337 44.2
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 6.9e-62 243.0 276 49.6
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.2e-61 242.3 309 47.6
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 5.8e-61 240.0 377 43.0
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.3e-60 238.8 429 40.8
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 8.4e-60 236.1 378 43.4
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 8.4e-60 236.1 378 43.4
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 8.4e-60 236.1 378 43.4
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 8.4e-60 236.1 330 46.7
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 3.2e-59 234.2 425 40.0
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 1.2e-58 232.3 333 44.4
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 2.3e-57 228.0 330 43.0
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 8.7e-57 226.1 548 34.9
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 1.1e-56 225.7 506 36.2
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 1.9e-56 224.9 335 45.7
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 2.5e-56 224.6 325 46.2
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 3.3e-56 224.2 330 44.5
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 4.8e-55 220.3 220 55.5
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 1.8e-54 218.4 399 39.1
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 9.0e-54 216.1 386 40.7
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 2.6e-53 214.5 639 31.5
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 5.8e-53 213.4 247 49.4
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.7e-52 211.8 421 38.5
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.7e-50 204.5 213 54.9
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 6.1e-50 203.4 461 34.5
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.0e-49 202.6 590 31.9
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 6.7e-49 199.9 361 38.8
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 8.7e-49 199.5 284 43.0
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 1.1e-48 199.1 368 39.1
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 3.3e-48 197.6 620 31.1
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 3.3e-48 197.6 378 39.4
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 9.0e-46 189.5 280 40.7
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.9e-43 181.8 472 31.1
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 3.2e-43 181.0 268 42.2
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 4.2e-43 180.6 253 43.5
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.2e-42 179.1 370 34.9
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 7.9e-42 176.4 173 58.4
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 2.3e-41 174.9 291 37.5
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 5.1e-41 173.7 598 29.4
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 2.5e-40 171.4 552 29.9
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 4.3e-40 170.6 476 31.3
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 5.7e-40 170.2 665 28.4
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 7.4e-40 169.9 174 55.2
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.7e-39 168.7 296 36.8
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.1e-38 166.0 351 36.2
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 4.1e-38 164.1 466 29.6
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 5.3e-38 163.7 478 31.2
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 5.3e-38 163.7 526 28.1
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 1.2e-37 162.5 468 29.9
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 3.4e-37 161.0 185 51.9
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 5.9e-37 160.2 244 42.2
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 7.7e-37 159.8 458 29.3
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 5.0e-36 157.1 198 50.5
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 6.5e-36 156.8 441 32.4
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 2.5e-35 154.8 460 29.1
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 2.5e-35 154.8 489 30.5
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.8e-33 148.7 256 38.3
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 2.6e-32 144.8 164 47.6
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 4.8e-31 140.6 355 33.2
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 1.8e-30 138.7 253 37.9
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 4.5e-29 134.0 490 31.6
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 3.8e-28 131.0 487 28.7
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 5.5e-27 127.1 109 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 4.7e-26 124.0 218 39.0
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.8e-25 122.1 258 34.9
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 3.0e-25 121.3 237 38.4
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 4.0e-25 120.9 340 31.8
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 5.2e-25 120.6 100 58.0
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 2.8e-23 114.8 146 45.9
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.7e-23 114.4 97 56.7
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 8.2e-23 113.2 152 42.1
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 3.8e-20 104.4 248 35.9
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 6.5e-20 103.6 239 36.4
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 9.4e-19 99.8 476 26.7
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 8.0e-18 96.7 110 43.6
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 3.0e-17 94.7 200 34.0
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 5.2e-17 94.0 227 33.0
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 8.3e-15 86.7 187 33.7
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 1.6e-13 82.4 159 39.6
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 1.6e-13 82.4 118 39.8
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 3.5e-13 81.3 173 36.4
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 3.8e-12 77.8 512 24.4
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 2.7e-10 71.6 172 36.0
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 4.7e-10 70.9 83 45.8
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 5.2e-09 67.4 241 31.5
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 1.2e-08 66.2 72 47.2
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.0e-08 65.5 48 64.6
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 1.7e-07 62.4 412 24.8
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 2.2e-07 62.0 299 25.1
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 2.8e-07 61.6 37 67.6
DCAR_005511 Daucus carota HOM05D004311 ORTHO05D005145 4.9e-07 60.8 159 32.1
MD13G1258700 Malus domestica HOM05D004311 ORTHO05D005145 2.4e-06 58.5 42 64.3
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 4.1e-06 57.8 394 27.9


User provided reference genes

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