Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1652.1 808 100.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1386.3 860 80.9
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1382.9 856 82.5
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1380.5 856 81.1
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1360.5 860 80.2
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1280.4 858 75.6
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1273.8 868 74.3
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1273.8 877 75.0
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1269.2 858 75.2
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1268.1 856 74.5
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1265.4 813 78.2
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1256.9 812 78.7
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1255.0 882 73.5
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1250.3 888 71.8
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1250.0 858 73.3
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1245.0 855 73.5
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1244.6 855 73.6
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1241.1 840 75.0
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1241.1 861 73.4
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1239.6 900 70.9
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1234.6 862 74.5
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1232.6 854 73.8
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1231.1 871 72.4
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1228.8 896 71.1
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1226.5 829 74.7
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1226.1 858 72.5
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1224.5 857 74.0
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1223.8 871 72.3
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1223.0 861 71.9
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1222.2 861 73.6
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1221.8 858 72.7
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1221.8 893 70.4
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1217.6 858 72.4
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1213.4 858 72.3
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1213.0 860 71.4
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1209.1 857 71.6
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1207.2 858 71.3
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1204.5 893 69.4
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1201.8 893 69.3
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1197.6 861 71.7
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1192.9 860 70.8
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1191.4 809 73.9
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1184.9 889 69.7
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1179.9 887 69.8
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1178.3 886 69.6
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1177.9 858 70.4
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1177.9 861 70.5
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1177.2 861 71.1
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1175.2 867 70.2
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1174.1 863 70.2
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1172.9 855 69.7
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1170.2 877 69.7
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1167.5 867 70.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1165.6 858 70.0
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1162.9 868 69.2
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1161.0 876 69.9
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1159.8 856 69.6
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1158.3 857 70.1
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1157.9 885 68.8
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1156.0 854 69.1
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1155.6 857 68.7
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1154.8 860 70.1
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 902 67.7
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1150.6 862 69.0
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1150.2 864 68.9
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1148.7 891 67.5
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1148.3 873 68.6
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1144.0 891 67.7
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1143.3 886 66.9
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 858 69.2
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1140.9 889 67.4
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1140.9 857 69.0
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1139.0 859 68.7
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 858 68.3
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1135.9 889 67.4
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1135.9 889 67.3
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1133.2 863 69.4
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1130.9 912 66.0
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 861 67.8
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1128.6 859 69.3
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1124.8 936 62.9
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1124.4 873 67.4
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1122.5 913 65.4
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1115.9 864 67.1
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1114.0 896 65.6
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1102.4 862 68.1
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1099.3 864 67.5
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1093.2 871 65.0
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1089.7 855 65.7
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1084.7 859 66.0
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1083.2 872 64.9
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1082.4 859 66.1
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1080.9 870 64.3
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1079.7 871 64.8
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1076.6 860 66.3
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 5.5e-312 1074.7 879 63.8
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 4.6e-309 1064.3 745 72.5
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 7.9e-309 1063.5 861 63.3
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 3.9e-308 1061.2 842 67.2
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 8.7e-308 1060.1 866 62.8
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 1.5e-307 1059.3 880 64.9
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.8e-305 1052.4 881 63.1
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.0e-304 1048.9 876 64.3
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 7.1e-302 1040.4 872 65.3
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 2.7e-301 1038.5 877 64.8
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 2.7e-301 1038.5 883 64.4
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.9e-299 1032.3 878 63.7
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 3.3e-299 1031.6 880 64.8
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 7.4e-299 1030.4 823 68.0
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 1.1e-297 1026.5 940 58.7
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.8e-297 1025.8 882 64.1
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 1.3e-295 1019.6 885 63.7
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 5.0e-295 1017.7 879 63.0
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 8.5e-295 1016.9 879 63.0
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 9.4e-294 1013.4 883 63.2
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 5.7e-291 1004.2 872 62.6
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 2.2e-290 1002.3 859 63.6
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 2.6e-288 995.3 903 61.5
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 3.4e-288 995.0 950 58.2
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.1e-286 989.9 807 64.7
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 1.9e-286 989.2 900 61.1
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 1.6e-285 986.1 809 65.0
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 1.0e-284 983.4 858 61.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 4.7e-277 958.0 817 61.4
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 5.0e-271 937.9 878 59.2
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.7e-266 922.9 624 74.5
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.1e-265 920.2 897 56.4
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.3e-263 913.3 895 56.0
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.8e-263 911.8 882 57.0
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.5e-254 882.5 588 75.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 9.8e-251 870.5 860 54.3
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.9e-246 856.3 832 55.4
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 3.1e-244 849.0 563 76.2
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.3e-242 843.6 891 52.4
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.2e-240 837.0 819 54.8
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 5.0e-239 831.6 909 53.1
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 4.9e-234 815.1 878 52.4
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.1e-233 813.9 836 52.9
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.4e-233 812.8 819 53.1
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.9e-225 786.6 854 52.0
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.4e-220 769.6 801 53.8
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 4.3e-214 748.8 622 61.4
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 2.6e-195 686.4 511 64.4
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.5e-190 669.8 787 45.4
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.1e-185 654.4 766 45.6
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 4.3e-182 642.5 777 44.8
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.3e-170 604.4 635 54.8
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 5.1e-167 592.4 635 54.0
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 2.0e-166 590.5 487 57.9
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 3.7e-165 586.3 881 41.9
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.8e-156 557.4 497 59.8
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 8.3e-149 531.9 433 64.0
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 1.2e-147 528.1 584 51.5
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 8.6e-130 468.8 496 48.0
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.6e-115 421.4 478 50.2
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 4.0e-103 380.2 513 39.0
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 2.6e-94 350.9 301 64.8
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.3e-89 334.0 225 70.2
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.2e-86 325.5 512 40.6
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 9.9e-86 322.4 238 66.8
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 2.3e-82 311.2 645 31.0
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 6.0e-75 286.6 175 76.6
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.4e-68 265.4 238 58.4
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 5.3e-63 246.9 157 75.8
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.3e-56 225.7 423 31.0
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 1.0e-50 206.1 455 28.8
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 3.6e-43 181.0 365 35.9
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 5.0e-37 160.6 190 52.6
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 4.5e-22 110.9 74 78.4
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 5.0e-21 107.5 377 30.2
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 6.6e-21 107.1 179 35.8
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.5e-20 105.1 71 67.6
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.0e-19 100.1 127 50.4
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 3.3e-12 78.2 74 56.8


User provided reference genes

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