Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.6e-272 942.2 492 100.0
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.2e-220 768.1 492 81.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-217 760.0 492 79.5
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 3.7e-216 755.0 492 80.1
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.1e-215 751.9 492 78.9
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.3e-213 746.5 495 78.4
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-212 743.4 506 77.1
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.2e-205 719.2 492 75.8
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.2e-198 696.8 430 85.8
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 4.5e-198 694.9 492 74.8
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.9e-196 689.5 492 72.2
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.1e-193 680.2 492 72.0
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.7e-193 677.9 492 72.0
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 3.7e-192 675.2 492 71.7
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.1e-191 673.7 492 72.0
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.8e-191 672.9 469 73.6
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 2.0e-190 669.5 492 70.7
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.2e-188 662.1 492 69.3
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 5.5e-188 661.4 498 70.3
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.2e-188 661.0 494 71.5
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.2e-187 660.2 463 72.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 2.7e-187 659.1 501 68.5
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 6.1e-187 657.9 499 68.1
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.4e-186 656.8 499 68.1
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.9e-186 655.2 493 69.4
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.6e-185 652.5 498 68.5
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 7.4e-185 651.0 492 68.5
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 2.8e-184 649.0 494 66.6
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.8e-184 649.0 493 69.2
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 7.0e-183 644.4 498 68.1
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.2e-181 639.4 511 64.8
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.9e-181 639.0 492 67.3
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 5.0e-181 638.3 494 67.2
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.5e-181 637.5 492 67.1
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.4e-180 636.7 492 67.3
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.1e-179 632.9 492 66.9
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 8.0e-179 630.9 497 65.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 8.0e-179 630.9 493 67.3
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 2.3e-178 629.4 492 68.1
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 8.8e-178 627.5 493 66.9
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-175 620.5 489 66.5
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.4e-175 620.2 494 66.0
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.8e-175 619.8 496 66.3
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.4e-175 619.4 495 67.3
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 4.1e-175 618.6 492 66.1
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.0e-174 616.3 493 65.7
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.0e-174 616.3 495 66.7
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 4.5e-174 615.1 494 66.0
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 5.9e-174 614.8 462 69.5
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 5.5e-172 608.2 493 65.3
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 4.7e-171 605.1 477 67.3
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.4e-170 603.6 492 65.4
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.8e-170 603.2 544 60.5
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.3e-170 602.8 429 71.3
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.2e-170 601.7 492 65.0
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 2.0e-169 599.7 492 62.2
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.3e-169 599.0 494 65.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 4.4e-169 598.6 492 65.0
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.5e-169 597.8 484 65.7
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 9.7e-169 597.4 492 64.2
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.8e-168 595.1 523 62.1
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.3e-168 594.7 478 66.1
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 3.1e-167 592.4 492 64.4
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.7e-166 589.3 492 61.2
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.5e-166 589.0 515 62.3
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 5.9e-166 588.2 496 63.1
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.3e-165 587.0 507 61.5
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.9e-165 585.9 449 70.6
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.8e-165 585.5 509 62.1
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 6.5e-165 584.7 498 62.0
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.5e-164 583.6 408 72.8
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.9e-164 583.2 492 63.2
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 9.4e-164 580.9 492 63.4
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.2e-163 580.5 492 59.6
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.1e-163 579.7 493 60.9
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.0e-162 577.4 500 63.4
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 5.2e-162 575.1 492 62.4
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.2e-161 573.9 492 62.8
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 4.4e-161 572.0 498 62.4
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.3e-160 570.5 478 63.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 3.7e-160 568.9 492 59.3
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.3e-160 567.8 470 64.7
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.3e-160 567.8 453 66.2
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 5.4e-159 565.1 492 60.2
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 9.1e-159 564.3 492 61.2
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 9.1e-159 564.3 465 64.5
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.5e-156 557.0 470 65.3
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 4.2e-156 555.4 457 65.2
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.1e-155 553.1 494 59.5
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 2.3e-154 549.7 492 60.4
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.3e-152 543.9 510 59.8
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 4.1e-151 538.9 492 58.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 9.2e-151 537.7 438 64.4
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 5.0e-149 531.9 492 56.5
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 6.6e-149 531.6 493 58.6
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.5e-148 530.4 592 52.2
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 9.5e-148 527.7 499 57.5
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-147 526.9 486 58.4
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.0e-146 524.2 494 57.9
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.4e-146 523.9 498 58.8
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-144 517.3 494 57.9
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.2e-144 516.5 525 54.7
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.9e-144 516.2 493 57.6
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 4.9e-144 515.4 493 57.2
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 8.3e-144 514.6 492 57.1
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 7.0e-143 511.5 492 57.3
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.2e-142 510.8 495 57.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-142 510.4 494 57.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 4.6e-142 508.8 494 57.1
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.0e-142 508.4 540 54.6
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.8e-142 508.1 540 54.6
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 3.9e-141 505.8 492 56.1
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.0e-141 505.4 494 55.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.2e-139 500.7 495 55.8
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.8e-138 496.9 393 65.1
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 6.8e-138 495.0 479 56.2
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 4.4e-137 492.3 500 55.2
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.7e-136 490.3 492 55.3
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.7e-136 490.3 474 56.1
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 6.4e-136 488.4 471 56.9
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.4e-135 486.5 493 54.6
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-134 483.8 493 54.2
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.7e-134 483.0 406 60.3
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 4.3e-132 475.7 494 53.6
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 6.2e-131 471.9 492 53.7
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.1e-130 471.1 492 53.7
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.9e-127 460.3 493 52.1
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.7e-125 453.8 396 62.1
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 3.0e-125 453.0 482 55.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.6e-125 451.4 452 56.9
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.2e-123 445.3 495 53.9
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.4e-119 433.3 492 50.8
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 6.6e-117 425.2 493 49.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.5e-105 387.5 492 45.5
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 6.4e-104 382.1 216 81.0
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-101 374.0 412 51.9
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 5.1e-101 372.5 352 58.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-100 370.2 416 51.2
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.3e-96 357.8 453 45.0
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.7e-94 350.1 216 75.5
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 7.9e-94 348.6 454 42.5
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.8e-93 347.4 368 48.4
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.5e-87 327.0 348 48.6
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 3.2e-87 326.6 222 66.2
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.1e-82 311.6 362 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.1e-82 309.7 315 49.5
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 4.8e-67 259.6 176 69.9
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.2e-61 239.6 156 76.9
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.7e-59 234.6 240 56.7
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 9.1e-58 228.8 324 46.6
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.2e-53 213.0 135 71.9
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.7e-49 200.7 277 47.3
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.3e-45 187.6 247 39.7
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 3.3e-39 167.2 244 36.5
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 2.0e-36 157.9 230 45.7
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 2.7e-33 147.5 190 38.4
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.9e-32 143.7 94 68.1
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 7.3e-31 139.4 122 67.2
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 9.2e-26 122.5 76 71.1
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 7.3e-23 112.8 70 70.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.5e-20 105.1 117 57.3
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.3e-16 91.3 56 69.6
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.5e-15 85.9 96 52.1
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 6.2e-14 83.2 233 24.5
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 2.4e-10 71.2 43 74.4
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 1.3e-08 65.5 87 51.7
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 3.9e-08 63.9 73 46.6
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 6.6e-08 63.2 42 61.9


User provided reference genes

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