Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22354 Davidia involucrata HOM05D004713 ORTHO05D182700 5.4e-56 220.7 108 100.0
TAR627G1043 Trochodendron aralioides HOM05D004713 ORTHO05D005658 5.9e-10 67.8 37 83.8
Gohir.A03G160900 Gossypium hirsutum HOM05D004713 ORTHO05D005658 7.7e-10 67.4 37 86.5
Gohir.A03G161000 Gossypium hirsutum HOM05D004713 ORTHO05D005658 7.7e-10 67.4 37 86.5
Gohir.D02G184300 Gossypium hirsutum HOM05D004713 ORTHO05D005658 7.7e-10 67.4 37 86.5
Gohir.D02G184350 Gossypium hirsutum HOM05D004713 ORTHO05D005658 7.7e-10 67.4 37 86.5
Gorai.005G206500 Gossypium raimondii HOM05D004713 ORTHO05D005658 7.7e-10 67.4 37 86.5
Gorai.005G206600 Gossypium raimondii HOM05D004713 ORTHO05D005658 7.7e-10 67.4 37 86.5
MBI18_g36116_MAGBIO Magnolia biondii HOM05D004713 ORTHO05D005658 7.7e-10 67.4 36 86.1
GSVIVG01015713001 Vitis vinifera HOM05D004713 ORTHO05D005658 1.3e-09 66.6 37 83.8
Lj1A855G17 Lonicera japonica HOM05D004713 ORTHO05D005658 1.7e-09 66.2 38 81.6
Manes.13G077148 Manihot esculenta HOM05D004713 ORTHO05D005658 1.7e-09 66.2 37 81.1
SGA_v2.0_scaffold159G37610 Striga asiatica HOM05D004713 ORTHO05D005658 1.7e-09 66.2 37 83.8
Cfa020490 Carpinus fangiana HOM05D004713 ORTHO05D005658 2.2e-09 65.9 35 88.6
Eucgr.F01067 Eucalyptus grandis HOM05D004713 ORTHO05D005658 2.2e-09 65.9 37 81.1
Sabra19G0119100 Salix brachista HOM05D004713 ORTHO05D005658 2.2e-09 65.9 45 68.9
Sabra19G0134800 Salix brachista HOM05D004713 ORTHO05D005658 2.2e-09 65.9 45 68.9
TWI36G0474 Tripterygium wilfordii HOM05D004713 ORTHO05D005658 2.2e-09 65.9 35 88.6
Manes.14G016000 Manihot esculenta HOM05D004713 ORTHO05D005658 2.9e-09 65.5 37 83.8
CiPaw.11G178400 Carya illinoinensis HOM05D004713 ORTHO05D005658 3.8e-09 65.1 37 78.4
AUR62025154 Chenopodium quinoa HOM05D004713 ORTHO05D005658 3.8e-09 65.1 35 85.7
Duzib248G1304 Durio zibethinus HOM05D004713 ORTHO05D005658 3.8e-09 65.1 37 81.1
Sabra13G0120100 Salix brachista HOM05D004713 ORTHO05D005658 3.8e-09 65.1 45 66.7
Actinidia18739 Actinidia chinensis HOM05D004713 ORTHO05D005658 5.0e-09 64.7 36 83.3
Duzib052G0720 Durio zibethinus HOM05D004713 ORTHO05D005658 5.0e-09 64.7 38 78.9
Hma1.2p1_1258F.1_g270890 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 5.0e-09 64.7 37 81.1
Medtr2g089510 Medicago truncatula HOM05D004713 ORTHO05D005658 5.0e-09 64.7 37 81.1
RhsimUnG0257700 Rhododendron simsii HOM05D004713 ORTHO05D005658 5.0e-09 64.7 37 78.4
ATR1132G116 Amborella trichopoda HOM05D004713 ORTHO05D005658 6.5e-09 64.3 35 82.9
CiPaw.12G123600 Carya illinoinensis HOM05D004713 ORTHO05D005658 6.5e-09 64.3 37 81.1
Duzib132G0433 Durio zibethinus HOM05D004713 ORTHO05D005658 6.5e-09 64.3 37 78.4
Hma1.2p1_2769F.1_g328190 Hydrangea macrophylla HOM05D004713 ORTHO05D005658 6.5e-09 64.3 37 78.4
TPR.G18047 Trifolium pratense HOM05D004713 ORTHO05D005658 6.5e-09 64.3 35 82.9
VMungo1080G0078 Vigna mungo HOM05D004713 ORTHO05D005658 6.5e-09 64.3 37 83.8
GSVIVG01014457001 Vitis vinifera HOM05D004713 ORTHO05D005658 6.5e-09 64.3 37 81.1
Aa31LG5G2780 Aethionema arabicum HOM05D004713 ORTHO05D005658 8.5e-09 63.9 37 75.7
CSS0013440 Camellia sinensis var. sinensis HOM05D004713 ORTHO05D005658 8.5e-09 63.9 37 81.1
Carub.0006s3378 Capsella rubella HOM05D004713 ORTHO05D005658 8.5e-09 63.9 36 80.6
HanXRQChr13g0407301 Helianthus annuus HOM05D004713 ORTHO05D005658 8.5e-09 63.9 37 78.4
Phvul.005G109400 Phaseolus vulgaris HOM05D004713 ORTHO05D005658 8.5e-09 63.9 37 81.1
EL10Ac9g20726 Beta vulgaris HOM05D004713 ORTHO05D005658 1.1e-08 63.5 35 82.9
Ca_01549_v3 Cicer arietinum L. HOM05D004713 ORTHO05D005658 1.1e-08 63.5 35 85.7
Dinv13841 Davidia involucrata HOM05D004713 ORTHO05D005658 1.1e-08 63.5 37 78.4
Nn1g03832 Nelumbo nucifera HOM05D004713 ORTHO05D005658 1.1e-08 63.5 37 81.1
Potri.013G148900 Populus trichocarpa HOM05D004713 ORTHO05D005658 1.1e-08 63.5 45 64.4
Potri.019G118500 Populus trichocarpa HOM05D004713 ORTHO05D005658 1.1e-08 63.5 45 64.4
PGR083G1071 Punica granatum HOM05D004713 ORTHO05D005658 1.1e-08 63.5 35 85.7
QL08p036617 Quercus lobata HOM05D004713 ORTHO05D005658 1.1e-08 63.5 37 73.0
Thecc.02G168200 Theobroma cacao HOM05D004713 ORTHO05D005658 1.1e-08 63.5 37 81.1
ClCG02G001400 Citrullus lanatus HOM05D004713 ORTHO05D005658 1.5e-08 63.2 39 71.8
Ciclev10016706m.g Citrus clementina HOM05D004713 ORTHO05D005658 1.5e-08 63.2 40 70.0
Prupe.3G228100 Prunus persica HOM05D004713 ORTHO05D005658 1.5e-08 63.2 35 85.7
RcHm_v2.0_Chr2g0161301 Rosa chinensis HOM05D004713 ORTHO05D005658 1.5e-08 63.2 35 85.7
vmacro09572 Vaccinium macrocarpon HOM05D004713 ORTHO05D005658 1.5e-08 63.2 36 77.8
GSVIVG01000453001 Vitis vinifera HOM05D004713 ORTHO05D005658 1.5e-08 63.2 37 78.4
FAN14G2217 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.9e-08 62.8 60 51.7
Lsat_1_v5_gn_0_5321 Lactuca sativa HOM05D004713 ORTHO05D005658 1.9e-08 62.8 37 73.0
Psat5g267960 Pisum sativum HOM05D004713 ORTHO05D005658 1.9e-08 62.8 37 78.4
SalBow7G3919 Salvia bowleyana HOM05D004713 ORTHO05D005658 1.9e-08 62.8 36 80.6
MSTRG.6530 Avicennia marina HOM05D004713 ORTHO05D005658 2.5e-08 62.4 37 75.7
Glyma.13G302900 Glycine max HOM05D004713 ORTHO05D005658 2.5e-08 62.4 37 78.4
Oeu006770.1 Olea europaea HOM05D004713 ORTHO05D005658 2.5e-08 62.4 46 67.4
PGR042G3467 Punica granatum HOM05D004713 ORTHO05D005658 2.5e-08 62.4 34 85.3
Hund01214 Selenicereus undatus HOM05D004713 ORTHO05D005658 2.5e-08 62.4 35 80.0
THA.LOC104801189 Tarenaya hassleriana HOM05D004713 ORTHO05D005658 2.5e-08 62.4 37 73.0
Ah.01g014440 Amaranthus hybridus HOM05D004713 ORTHO05D005658 3.2e-08 62.0 45 66.7
Lalb_Chr14g0366531 Lupinus albus HOM05D004713 ORTHO05D005658 3.2e-08 62.0 37 78.4
MD17G1086300 Malus domestica HOM05D004713 ORTHO05D005658 3.2e-08 62.0 35 82.9
AUR62033720 Chenopodium quinoa HOM05D004713 ORTHO05D005658 4.2e-08 61.6 35 80.0
Haze_09549 Corylus avellana HOM05D004713 ORTHO05D005658 4.2e-08 61.6 33 90.9
MELO3C018775.2 Cucumis melo HOM05D004713 ORTHO05D005658 4.2e-08 61.6 37 75.7
FvH4_6g44370 Fragaria vesca HOM05D004713 ORTHO05D005658 4.2e-08 61.6 35 82.9
FAN02G1221 Fragaria x ananassa HOM05D004713 ORTHO05D005658 4.2e-08 61.6 35 82.9
BcaC04g23984 Brassica carinata HOM05D004713 ORTHO05D005658 5.5e-08 61.2 36 80.6
C09p02650 Brassica napus HOM05D004713 ORTHO05D005658 5.5e-08 61.2 36 80.6
BolC9t53193H Brassica oleracea HOM05D004713 ORTHO05D005658 5.5e-08 61.2 36 80.6
Lj3g0005468 Lotus japonicus HOM05D004713 ORTHO05D005658 5.5e-08 61.2 35 77.1
MD09G1098300 Malus domestica HOM05D004713 ORTHO05D005658 5.5e-08 61.2 35 80.0
Sed0023828 Sechium edule HOM05D004713 ORTHO05D005658 5.5e-08 61.2 37 73.0
Atru.chr6.3090 Acer truncatum HOM05D004713 ORTHO05D005658 7.2e-08 60.8 40 67.5
Actinidia35286 Actinidia chinensis HOM05D004713 ORTHO05D005658 7.2e-08 60.8 34 85.3
arahy.Tifrunner.gnm1.ann1.39S8LV Arachis hypogaea HOM05D004713 ORTHO05D005658 7.2e-08 60.8 37 75.7
CDE12G0380 Ceratophyllum demersum HOM05D004713 ORTHO05D005658 7.2e-08 60.8 37 73.0
Migut.M00361 Erythranthe guttata HOM05D004713 ORTHO05D005658 7.2e-08 60.8 35 82.9
Lj8C161T8 Lonicera japonica HOM05D004713 ORTHO05D005658 7.2e-08 60.8 34 85.3
Lalb_Chr24g0399801 Lupinus albus HOM05D004713 ORTHO05D005658 7.2e-08 60.8 37 75.7
RcHm_v2.0_Chr1g0330511 Rosa chinensis HOM05D004713 ORTHO05D005658 7.2e-08 60.8 37 75.7
arahy.Tifrunner.gnm1.ann1.NN0MZU Arachis hypogaea HOM05D004713 ORTHO05D005658 9.4e-08 60.5 35 77.1
arahy.Tifrunner.gnm1.ann1.V1P8P6 Arachis hypogaea HOM05D004713 ORTHO05D005658 9.4e-08 60.5 35 77.1
CsaV3_7G004050 Cucumis sativus L. HOM05D004713 ORTHO05D005658 9.4e-08 60.5 37 75.7
FAN05G5200 Fragaria x ananassa HOM05D004713 ORTHO05D005658 9.4e-08 60.5 35 80.0
FAN05G5597 Fragaria x ananassa HOM05D004713 ORTHO05D005658 9.4e-08 60.5 35 80.0
Glyma.12G199400 Glycine max HOM05D004713 ORTHO05D005658 9.4e-08 60.5 37 75.7
arahy.Tifrunner.gnm1.ann1.F0UT86 Arachis hypogaea HOM05D004713 ORTHO05D005658 1.2e-07 60.1 37 75.7
FAN09G3163 Fragaria x ananassa HOM05D004713 ORTHO05D005658 1.2e-07 60.1 35 80.0
Oeu019373.1 Olea europaea HOM05D004713 ORTHO05D005658 1.2e-07 60.1 37 75.7
Cc05_g05920 Coffea canephora HOM05D004713 ORTHO05D005658 1.6e-07 59.7 45 64.4
Peaxi162Scf00485g00109 Petunia axillaris HOM05D004713 ORTHO05D005658 1.6e-07 59.7 35 77.1
HPP92_001796 Vanilla planifolia HOM05D004713 ORTHO05D005658 1.6e-07 59.7 35 74.3
AT4G03280 Arabidopsis thaliana HOM05D004713 ORTHO05D005658 2.1e-07 59.3 34 79.4
Cpa.g.sc34.64 Carica papaya HOM05D004713 ORTHO05D005658 2.1e-07 59.3 34 76.5
Os07g0556200 Oryza sativa ssp. japonica HOM05D004713 ORTHO05D005658 2.1e-07 59.3 37 73.0
AL6G49650 Arabidopsis lyrata HOM05D004713 ORTHO05D005658 2.7e-07 58.9 34 79.4
CANSAT11G1961 Cannabis sativa HOM05D004713 ORTHO05D005658 2.7e-07 58.9 33 81.8
CAN.G980.4 Capsicum annuum HOM05D004713 ORTHO05D005658 2.7e-07 58.9 35 74.3
CARHR251730 Cardamine hirsuta HOM05D004713 ORTHO05D005658 2.7e-07 58.9 34 79.4
PSO541G4076 Papaver somniferum HOM05D004713 ORTHO05D005658 3.6e-07 58.5 35 77.1
PSO675G3482 Papaver somniferum HOM05D004713 ORTHO05D005658 3.6e-07 58.5 35 77.1
Sc21g0002180 Simmondsia chinensis HOM05D004713 ORTHO05D005658 3.6e-07 58.5 37 73.0
Nitab4.5_0002714g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 4.7e-07 58.2 35 80.0
Nitab4.5_0014322g0020 Nicotiana tabacum HOM05D004713 ORTHO05D005658 4.7e-07 58.2 35 80.0
unitig_85.g27301 Utricularia gibba HOM05D004713 ORTHO05D005658 6.1e-07 57.8 45 62.2
Actinidia25411 Actinidia chinensis HOM05D004713 ORTHO05D005658 8.0e-07 57.4 39 61.5
ECA240G4341 Erigeron canadensis HOM05D004713 ORTHO05D005658 8.0e-07 57.4 33 78.8
BcaC01g06693 Brassica carinata HOM05D004713 ORTHO05D005658 1.0e-06 57.0 33 78.8
A03p30490 Brassica napus HOM05D004713 ORTHO05D005658 1.0e-06 57.0 33 78.8
C03p36910 Brassica napus HOM05D004713 ORTHO05D005658 1.0e-06 57.0 33 78.8
BolC3t15998H Brassica oleracea HOM05D004713 ORTHO05D005658 1.0e-06 57.0 33 78.8
BraA03t12231Z Brassica rapa HOM05D004713 ORTHO05D005658 1.0e-06 57.0 33 78.8
Eucgr.A01769 Eucalyptus grandis HOM05D004713 ORTHO05D005658 1.0e-06 57.0 35 74.3
DCAR_008695 Daucus carota HOM05D004713 ORTHO05D005658 1.4e-06 56.6 33 78.8
SGA_v2.0_scaffold49G18316 Striga asiatica HOM05D004713 ORTHO05D005658 1.4e-06 56.6 33 78.8
SEGI_32030 Sequoiadendron giganteum HOM05D004713 ORTHO05D005658 2.3e-06 55.8 46 58.7
Aqoxy1G03929 Aquilegia oxysepala HOM05D004713 ORTHO05D005658 3.0e-06 55.5 34 70.6
HanXRQChr03g0077251 Helianthus annuus HOM05D004713 ORTHO05D005658 4.0e-06 55.1 33 72.7
BcaB01g01960 Brassica carinata HOM05D004713 ORTHO05D005658 6.7e-06 54.3 33 78.8
BcaB01g02517 Brassica carinata HOM05D004713 ORTHO05D005658 6.7e-06 54.3 33 78.8
A09p02620 Brassica napus HOM05D004713 ORTHO05D005658 6.7e-06 54.3 33 78.8
BraA09t35905Z Brassica rapa HOM05D004713 ORTHO05D005658 6.7e-06 54.3 33 78.8
Sopen12g001560 Solanum pennellii HOM05D004713 ORTHO05D005658 6.7e-06 54.3 35 71.4
unitig_699.g19605 Utricularia gibba HOM05D004713 ORTHO05D005658 6.7e-06 54.3 32 78.1
Thhalv10028941m.g Eutrema salsugineum HOM05D004713 ORTHO05D005658 8.8e-06 53.9 33 78.8
Sp6g03320 Schrenkiella parvula HOM05D004713 ORTHO05D005658 8.8e-06 53.9 33 75.8


User provided reference genes

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