Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 3.2e-110 401.7 198 100.0
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 3.5e-77 292.0 149 98.0
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.9e-76 288.5 149 95.3
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.1e-76 288.1 149 94.6
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 5.1e-76 288.1 149 95.3
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 5.1e-76 288.1 149 95.3
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 6.6e-76 287.7 149 94.6
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 8.7e-76 287.3 149 94.0
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 1.1e-75 287.0 149 94.0
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 1.1e-75 287.0 149 94.6
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.1e-75 287.0 149 94.6
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.5e-75 286.6 149 94.0
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 1.5e-75 286.6 149 94.0
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.9e-75 286.2 149 94.6
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 1.9e-75 286.2 149 94.0
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 1.9e-75 286.2 149 94.6
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.5e-75 285.8 149 94.6
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.5e-75 285.8 149 93.3
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 4.3e-75 285.0 149 94.0
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 5.6e-75 284.6 149 94.6
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 5.6e-75 284.6 149 93.3
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 5.6e-75 284.6 149 93.3
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 5.6e-75 284.6 149 93.3
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 7.3e-75 284.3 149 95.3
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 7.3e-75 284.3 149 92.6
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 7.3e-75 284.3 149 92.6
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 7.3e-75 284.3 149 92.6
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 7.3e-75 284.3 149 92.6
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 7.3e-75 284.3 149 92.6
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 7.3e-75 284.3 149 94.0
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 9.6e-75 283.9 149 95.3
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 9.6e-75 283.9 149 93.3
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 1.3e-74 283.5 149 94.0
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.6e-74 283.1 149 91.9
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 1.6e-74 283.1 149 91.9
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 1.6e-74 283.1 149 92.6
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.6e-74 283.1 149 91.9
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.6e-74 283.1 149 92.6
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.1e-74 282.7 149 91.3
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.1e-74 282.7 149 91.9
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 2.1e-74 282.7 149 91.9
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 2.1e-74 282.7 149 92.6
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 2.8e-74 282.3 149 94.6
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 2.8e-74 282.3 149 91.9
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.8e-74 282.3 149 92.6
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 2.8e-74 282.3 149 93.3
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 3.6e-74 282.0 149 91.9
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 3.6e-74 282.0 149 92.6
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 4.8e-74 281.6 149 91.9
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.8e-74 281.6 149 92.6
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.8e-74 281.6 149 92.6
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 4.8e-74 281.6 149 92.6
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 6.2e-74 281.2 147 94.6
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 6.2e-74 281.2 149 91.3
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 8.1e-74 280.8 149 91.3
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.1e-73 280.4 149 91.9
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 1.1e-73 280.4 149 91.3
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.1e-73 280.4 149 91.3
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.1e-73 280.4 149 91.9
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.1e-73 280.4 149 91.3
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 1.8e-73 279.6 149 91.3
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 1.8e-73 279.6 149 90.6
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 2.4e-73 279.3 149 91.3
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 2.4e-73 279.3 149 91.3
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 3.1e-73 278.9 149 90.6
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 3.1e-73 278.9 158 89.2
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 3.1e-73 278.9 149 91.9
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 4.0e-73 278.5 149 91.9
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 4.0e-73 278.5 149 90.6
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 4.0e-73 278.5 146 93.2
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 4.0e-73 278.5 149 90.6
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 5.3e-73 278.1 149 89.9
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 5.3e-73 278.1 144 94.4
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 5.3e-73 278.1 149 91.3
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 5.3e-73 278.1 149 91.3
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 5.3e-73 278.1 149 91.3
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 9.0e-73 277.3 160 85.6
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 9.0e-73 277.3 149 89.9
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 9.0e-73 277.3 149 90.6
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 9.0e-73 277.3 149 90.6
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.5e-72 276.6 149 89.9
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.5e-72 276.6 149 89.9
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.5e-72 276.6 149 89.9
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 2.0e-72 276.2 149 89.3
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 2.0e-72 276.2 149 89.3
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 2.0e-72 276.2 149 89.3
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 2.0e-72 276.2 149 89.3
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 2.0e-72 276.2 149 89.3
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 2.6e-72 275.8 149 89.9
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 3.4e-72 275.4 149 89.9
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 3.4e-72 275.4 149 89.9
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 4.5e-72 275.0 163 85.9
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.5e-72 275.0 162 85.2
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 4.5e-72 275.0 149 89.9
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 5.8e-72 274.6 149 89.9
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 7.6e-72 274.2 149 89.3
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 9.9e-72 273.9 149 89.3
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 9.9e-72 273.9 149 88.6
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 9.9e-72 273.9 149 89.3
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.3e-71 273.5 149 88.6
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 1.7e-71 273.1 149 89.3
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 1.7e-71 273.1 149 89.3
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.7e-71 273.1 147 90.5
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 2.9e-71 272.3 149 87.9
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 4.9e-71 271.6 149 87.9
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 4.9e-71 271.6 164 81.1
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 4.9e-71 271.6 149 88.6
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 4.9e-71 271.6 149 87.9
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 6.4e-71 271.2 168 82.7
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 8.4e-71 270.8 147 89.1
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.1e-70 270.4 149 86.6
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.1e-70 270.4 149 85.9
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 1.1e-70 270.4 155 87.1
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.4e-70 270.0 146 87.7
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.9e-70 269.6 149 87.2
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 4.2e-70 268.5 149 85.9
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 4.2e-70 268.5 147 91.2
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 4.2e-70 268.5 144 90.3
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 4.2e-70 268.5 144 90.3
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 9.3e-70 267.3 149 85.9
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.2e-69 266.9 165 81.8
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 2.7e-69 265.8 149 85.9
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 4.6e-69 265.0 168 79.8
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 7.9e-69 264.2 149 85.9
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.9e-67 259.6 148 85.1
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.5e-67 259.2 170 78.2
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.4e-65 252.7 147 82.3
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 6.9e-65 251.1 203 66.0
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.2e-64 250.4 149 79.9
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.2e-64 250.4 149 79.9
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.5e-64 250.0 173 75.1
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.7e-63 246.5 149 79.9
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.2e-63 246.1 149 78.5
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 4.2e-62 241.9 149 77.2
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 6.0e-61 238.0 134 82.8
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.8e-58 228.4 124 90.3
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 1.1e-57 227.3 149 79.2
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.1e-57 225.7 149 77.9
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 3.1e-57 225.7 142 76.1
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 3.4e-56 222.2 148 77.7
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 7.6e-56 221.1 149 77.2
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.8e-55 218.8 133 78.2
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.5e-51 206.8 190 57.4
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 9.7e-51 204.1 147 74.1
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 2.4e-49 199.5 135 67.4
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.5e-48 196.8 107 90.7
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 8.8e-44 181.0 120 71.7
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 4.3e-43 178.7 154 58.4
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 7.4e-43 177.9 147 66.7
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.6e-40 169.5 149 61.7
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.5e-38 162.9 85 94.1
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 7.2e-38 161.4 131 58.0
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 5.1e-36 155.2 89 87.6
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.0e-28 131.0 65 92.3
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.2e-26 123.2 60 93.3
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 4.8e-26 122.1 101 61.4
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 3.5e-24 115.9 60 86.7
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 5.9e-24 115.2 65 80.0
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 2.7e-21 106.3 68 72.1
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 4.4e-19 99.0 52 98.1
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.8e-18 96.3 52 92.3
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 9.1e-17 91.3 49 93.9
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 9.4e-14 81.3 45 88.9
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 3.6e-13 79.3 47 83.0
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 4.7e-13 79.0 76 60.5
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 6.3e-10 68.6 69 53.6
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 9.5e-06 54.7 34 67.6


User provided reference genes

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