Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.8e-185 652.5 340 100.0
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.8e-84 317.0 215 79.5
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 3.9e-84 315.8 215 79.1
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.7e-82 309.3 216 76.4
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.4e-81 307.4 216 75.9
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.8e-81 307.0 221 74.2
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.9e-78 297.0 201 77.1
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 3.2e-78 296.2 215 72.6
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 7.9e-77 291.6 211 73.0
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 5.1e-76 288.9 202 76.2
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 8.7e-76 288.1 215 72.6
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 1.9e-75 287.0 219 72.6
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 3.3e-75 286.2 215 71.6
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.2e-72 277.7 237 64.6
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 3.4e-72 276.2 216 68.1
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 3.4e-72 276.2 218 71.1
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 5.9e-72 275.4 235 65.5
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.0e-71 274.6 218 70.6
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.0e-71 274.6 219 69.9
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.7e-71 273.9 215 69.3
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.7e-71 273.9 216 69.9
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.7e-71 273.9 235 65.1
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.7e-71 273.9 215 68.4
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.9e-71 273.1 235 64.7
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 3.8e-71 272.7 215 67.9
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 5.0e-71 272.3 206 71.4
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 4.2e-70 269.2 205 70.2
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 4.2e-70 269.2 235 64.7
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 7.2e-70 268.5 215 66.0
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 9.4e-70 268.1 216 66.2
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 2.1e-69 266.9 237 64.1
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 2.1e-69 266.9 200 71.0
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.7e-69 266.5 218 68.3
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 2.7e-69 266.5 215 67.0
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.6e-69 266.2 218 68.3
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 4.6e-69 265.8 220 68.6
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 7.9e-69 265.0 218 68.3
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.0e-68 264.6 219 67.1
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.0e-68 264.6 220 67.7
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.4e-68 264.2 218 67.9
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.4e-68 264.2 209 70.8
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 2.3e-68 263.5 215 66.5
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 2.3e-68 263.5 220 66.4
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 2.3e-68 263.5 220 66.4
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.0e-68 263.1 218 67.4
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 3.0e-68 263.1 236 62.3
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 3.0e-68 263.1 215 66.0
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 3.9e-68 262.7 219 68.0
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 3.9e-68 262.7 216 67.1
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.1e-67 261.2 215 66.0
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 1.5e-67 260.8 215 64.7
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 2.0e-67 260.4 216 65.3
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.3e-67 259.6 213 68.1
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 4.3e-67 259.2 215 61.9
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 7.4e-67 258.5 234 62.0
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 9.7e-67 258.1 220 67.7
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.7e-66 257.3 220 66.8
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.7e-66 257.3 200 66.5
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 3.7e-66 256.1 215 64.2
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 4.8e-66 255.8 215 65.1
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 4.8e-66 255.8 222 66.2
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 6.3e-66 255.4 219 65.8
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 8.2e-66 255.0 215 64.7
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 3.1e-65 253.1 218 66.5
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 3.1e-65 253.1 226 64.2
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 4.1e-65 252.7 214 65.4
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 6.9e-65 251.9 218 64.2
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 3.4e-64 249.6 182 71.4
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.4e-64 249.6 218 61.5
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 5.9e-64 248.8 214 64.5
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 1.0e-63 248.1 203 67.0
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 3.8e-63 246.1 185 72.4
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 8.5e-63 245.0 184 73.4
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 4.2e-62 242.7 221 63.3
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.2e-61 241.1 182 73.1
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 2.7e-61 240.0 226 59.7
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 7.9e-61 238.4 226 60.6
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 1.1e-59 234.6 222 59.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 2.6e-59 233.4 221 61.1
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 9.7e-59 231.5 222 59.5
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.3e-58 231.1 239 57.3
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.7e-58 230.7 215 60.5
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 2.8e-58 229.9 241 56.8
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 2.8e-58 229.9 232 57.8
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 4.8e-58 229.2 232 57.3
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.1e-57 228.0 198 62.6
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.1e-57 228.0 188 67.0
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 2.6e-56 223.4 253 52.6
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 1.1e-54 218.0 175 69.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.5e-54 217.6 175 68.0
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 1.6e-53 214.2 151 74.8
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 8.0e-53 211.8 190 61.6
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 4.0e-52 209.5 186 62.9
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 5.7e-51 205.7 176 62.5
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.2e-47 193.7 139 72.7
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 1.6e-40 171.0 159 59.7
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 5.9e-40 169.1 251 42.2
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 7.7e-40 168.7 208 48.1
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 2.2e-39 167.2 210 51.0
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 9.4e-38 161.8 182 53.8
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.3e-36 157.1 145 59.3
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.2e-35 154.8 207 49.3
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.1e-33 148.3 173 49.1
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.1e-33 146.4 215 46.0
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 7.0e-33 145.6 176 49.4
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 4.5e-32 142.9 112 67.0
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 9.5e-30 135.2 141 51.8
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 7.5e-27 125.6 142 47.2
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.8e-25 120.9 104 61.5
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 5.9e-24 115.9 109 56.9
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.6e-23 112.5 79 72.2
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.4e-17 94.7 148 41.9
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 4.6e-16 89.7 207 32.4
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 3.9e-15 86.7 137 44.5
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 9.8e-11 72.0 62 61.3
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.9e-10 70.5 62 59.7
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 8.3e-10 68.9 62 59.7
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 8.3e-10 68.9 62 59.7
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 8.3e-10 68.9 62 61.3
Gohir.D01G074900 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.7e-08 63.9 75 49.3
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 6.0e-08 62.8 204 27.5


User provided reference genes

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