Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 3.5e-82 308.1 147 100.0
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 3.7e-71 271.6 138 92.0
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 6.9e-70 267.3 147 84.4
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 9.0e-70 266.9 147 83.7
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 1.7e-68 262.7 148 85.1
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 8.4e-68 260.4 148 85.1
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.8e-65 252.7 144 81.9
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 1.8e-65 252.7 138 84.8
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 2.3e-65 252.3 142 83.8
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 3.9e-65 251.5 147 79.6
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 5.1e-65 251.1 150 79.3
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 6.7e-65 250.8 148 82.4
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 8.7e-65 250.4 147 81.6
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 1.1e-64 250.0 147 78.9
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 1.5e-64 249.6 143 83.2
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 1.5e-64 249.6 149 79.9
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 2.5e-64 248.8 150 80.0
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 3.3e-64 248.4 148 80.4
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 4.3e-64 248.1 147 78.2
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 9.7e-64 246.9 154 78.6
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 9.7e-64 246.9 139 82.7
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 1.3e-63 246.5 130 86.9
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 1.3e-63 246.5 141 80.9
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 2.2e-63 245.7 147 76.9
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 2.2e-63 245.7 147 76.9
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 2.2e-63 245.7 147 77.6
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 2.8e-63 245.4 145 77.9
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.8e-63 245.4 149 77.9
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 2.8e-63 245.4 147 79.6
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 4.8e-63 244.6 147 75.5
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 4.8e-63 244.6 147 75.5
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 4.8e-63 244.6 150 77.3
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 8.2e-63 243.8 147 79.6
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 8.2e-63 243.8 129 85.3
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 8.2e-63 243.8 146 78.8
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 8.2e-63 243.8 136 81.6
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 1.1e-62 243.4 146 78.8
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 1.4e-62 243.0 145 77.2
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 1.4e-62 243.0 145 80.7
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 1.4e-62 243.0 142 79.6
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 1.8e-62 242.7 142 79.6
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.8e-62 242.7 141 79.4
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 1.8e-62 242.7 141 79.4
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.4e-62 242.3 124 88.7
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 2.4e-62 242.3 145 79.3
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 2.4e-62 242.3 142 78.9
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 3.1e-62 241.9 150 75.3
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 3.1e-62 241.9 147 75.5
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.1e-62 241.9 149 75.8
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 3.1e-62 241.9 147 75.5
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 4.1e-62 241.5 147 76.9
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 4.1e-62 241.5 147 76.9
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 5.3e-62 241.1 136 85.3
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 5.3e-62 241.1 146 77.4
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 5.3e-62 241.1 142 78.9
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 5.3e-62 241.1 125 84.8
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 6.9e-62 240.7 147 77.6
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 1.2e-61 240.0 147 77.6
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 2.0e-61 239.2 146 78.1
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 2.0e-61 239.2 129 82.9
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 4.5e-61 238.0 147 76.9
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 5.9e-61 237.7 147 75.5
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 1.0e-60 236.9 147 73.5
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 1.0e-60 236.9 146 78.1
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.3e-60 236.5 147 73.5
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 2.9e-60 235.3 126 84.9
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 2.9e-60 235.3 146 76.7
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 5.0e-60 234.6 142 74.6
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 5.0e-60 234.6 141 78.0
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 1.9e-59 232.6 178 65.2
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 2.5e-59 232.3 140 77.9
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 4.2e-59 231.5 145 71.0
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 5.5e-59 231.1 145 71.0
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.2e-58 229.9 140 72.9
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 7.9e-58 227.3 147 71.4
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 7.9e-58 227.3 145 72.4
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 2.3e-57 225.7 145 72.4
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 3.0e-57 225.3 168 65.5
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 6.7e-57 224.2 145 71.7
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 6.7e-57 224.2 142 77.5
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 1.9e-56 222.6 146 71.9
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 2.5e-56 222.2 208 55.8
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 7.4e-56 220.7 134 75.4
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 7.4e-56 220.7 134 75.4
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 7.4e-56 220.7 135 74.1
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 9.7e-56 220.3 146 71.2
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 1.3e-55 219.9 145 69.7
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 1.7e-55 219.5 138 73.9
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 2.2e-55 219.2 146 71.2
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 2.8e-55 218.8 138 71.0
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 3.7e-55 218.4 146 71.2
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 3.7e-55 218.4 146 71.2
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 1.4e-54 216.5 141 70.9
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 2.4e-54 215.7 138 69.6
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 3.1e-54 215.3 146 69.9
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 4.1e-54 214.9 146 69.9
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 5.3e-54 214.5 147 70.7
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 6.9e-54 214.2 146 69.9
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 6.9e-54 214.2 141 71.6
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 9.1e-54 213.8 146 69.2
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 3.4e-53 211.8 137 67.9
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 1.0e-52 210.3 121 75.2
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 1.3e-52 209.9 135 70.4
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 8.5e-52 207.2 157 66.2
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.1e-51 206.8 122 81.1
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 3.2e-51 205.3 137 67.9
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 1.5e-48 196.4 178 58.4
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 2.6e-48 195.7 117 76.1
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 9.7e-48 193.7 145 62.8
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 1.0e-44 183.7 94 87.2
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 3.8e-44 181.8 101 83.2
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 1.9e-43 179.5 109 76.1
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 2.5e-43 179.1 96 83.3
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 1.0e-41 173.7 93 83.9
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 4.1e-38 161.8 96 80.2
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.6e-37 159.8 97 74.2
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 1.2e-32 143.7 82 79.3
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 1.4e-22 110.2 111 55.9
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 4.4e-16 88.6 43 86.0
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 7.5e-16 87.8 66 68.2
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 3.6e-10 68.9 51 64.7
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 8.0e-10 67.8 47 68.1
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.8e-09 66.6 34 91.2
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 5.8e-08 61.6 37 78.4
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.4e-06 57.0 52 55.8


User provided reference genes

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