Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22207 Davidia involucrata HOM05D047335 ORTHO05D184500 4.8e-88 327.8 163 100.0
Dinv22206 Davidia involucrata HOM05D000139 ORTHO05D000103 1.3e-24 117.1 208 40.9
Dinv22209 Davidia involucrata HOM05D047335 ORTHO05D181816 5.8e-17 91.7 46 89.1
Dinv37849 Davidia involucrata HOM05D000139 ORTHO05D000103 8.6e-13 77.8 208 30.8
Gohir.D10G057700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.9e-12 76.6 208 29.8
Gorai.011G061800 Gossypium raimondii HOM05D000139 ORTHO05D000103 1.9e-12 76.6 208 29.8
Sopen03g040980 Solanum pennellii HOM05D000139 ORTHO05D000103 2.5e-12 76.3 208 30.3
Haze_16061 Corylus avellana HOM05D000139 ORTHO05D000103 3.3e-12 75.9 208 28.8
Gohir.A10G055800 Gossypium hirsutum HOM05D000139 ORTHO05D000103 3.3e-12 75.9 208 29.8
FvH4_6g35110 Fragaria vesca HOM05D000139 ORTHO05D000103 4.3e-12 75.5 211 29.4
FAN02G3961 Fragaria x ananassa HOM05D000139 ORTHO05D000103 4.3e-12 75.5 211 29.4
FAN05G3346 Fragaria x ananassa HOM05D000139 ORTHO05D000103 4.3e-12 75.5 211 29.4
FAN09G4556 Fragaria x ananassa HOM05D000139 ORTHO05D000103 4.3e-12 75.5 211 29.4
FAN14G3285 Fragaria x ananassa HOM05D000139 ORTHO05D000103 4.3e-12 75.5 211 29.4
MD17G1164500 Malus domestica HOM05D000139 ORTHO05D000103 4.3e-12 75.5 208 29.3
RcHm_v2.0_Chr2g0146331 Rosa chinensis HOM05D000139 ORTHO05D000103 4.3e-12 75.5 211 29.4
Cfa003514 Carpinus fangiana HOM05D000139 ORTHO05D000103 7.3e-12 74.7 208 28.4
Prupe.3G038000 Prunus persica HOM05D000139 ORTHO05D000103 9.5e-12 74.3 208 29.3
Dinv36146 Davidia involucrata HOM05D000139 ORTHO05D000103 1.2e-11 73.9 203 33.0
Potri.003G068700 Populus trichocarpa HOM05D000139 ORTHO05D000103 1.2e-11 73.9 208 29.3
Manes.11G016900 Manihot esculenta HOM05D000139 ORTHO05D000103 1.6e-11 73.6 208 29.3
CANSAT56G4412 Cannabis sativa HOM05D000139 ORTHO05D000103 2.1e-11 73.2 208 28.8
TAR624G0071 Trochodendron aralioides HOM05D000139 ORTHO05D000103 2.1e-11 73.2 213 29.6
Potri.001G166400 Populus trichocarpa HOM05D000139 ORTHO05D000103 2.8e-11 72.8 208 28.8
PGR119G1783 Punica granatum HOM05D000139 ORTHO05D000103 2.8e-11 72.8 208 28.8
Sabra01G0126800 Salix brachista HOM05D000139 ORTHO05D000103 2.8e-11 72.8 208 28.8
Duzib192G0567 Durio zibethinus HOM05D000139 ORTHO05D000103 3.6e-11 72.4 208 29.3
Peaxi162Scf00038g01911 Petunia axillaris HOM05D000139 ORTHO05D000103 3.6e-11 72.4 208 28.4
Solyc06g062990.3 Solanum lycopersicum HOM05D000139 ORTHO05D000103 3.6e-11 72.4 208 27.9
Sopen06g022440 Solanum pennellii HOM05D000139 ORTHO05D000103 3.6e-11 72.4 208 27.9
PGSC0003DMG400022899 Solanum tuberosum HOM05D000139 ORTHO05D000103 3.6e-11 72.4 208 28.8
TAR636G1434 Trochodendron aralioides HOM05D000139 ORTHO05D000103 3.6e-11 72.4 213 29.6
Dinv20412 Davidia involucrata HOM05D000139 ORTHO05D000103 4.7e-11 72.0 208 29.8
Hma1.2p1_0229F.1_g096720 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 4.7e-11 72.0 208 28.8
Sabra03G0040200 Salix brachista HOM05D000139 ORTHO05D000103 4.7e-11 72.0 208 28.4
PGSC0003DMG400004893 Solanum tuberosum HOM05D000139 ORTHO05D000103 4.7e-11 72.0 208 27.9
TWI59G0334 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 4.7e-11 72.0 208 29.3
Ah.15g095190 Amaranthus hybridus HOM05D000139 ORTHO05D000103 6.2e-11 71.6 209 29.2
Thecc.06G123700 Theobroma cacao HOM05D000139 ORTHO05D000103 6.2e-11 71.6 208 28.8
Atru.chr1.4069 Acer truncatum HOM05D000139 ORTHO05D000103 8.0e-11 71.2 208 28.4
Rhsim08G0240800 Rhododendron simsii HOM05D000139 ORTHO05D000103 8.0e-11 71.2 208 28.8
COL.COLO4_30788 Corchorus olitorius HOM05D000139 ORTHO05D000103 1.1e-10 70.9 208 27.9
Gohir.D05G141400 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.1e-10 70.9 208 28.4
Cc04_g01100 Coffea canephora HOM05D000139 ORTHO05D000103 1.4e-10 70.5 208 28.4
Duzib235G1131 Durio zibethinus HOM05D000139 ORTHO05D000103 1.4e-10 70.5 208 28.4
Gorai.009G145500 Gossypium raimondii HOM05D000139 ORTHO05D000103 1.4e-10 70.5 208 28.4
CAN.G862.44 Capsicum annuum HOM05D000139 ORTHO05D000103 1.8e-10 70.1 208 28.4
AUR62001448 Chenopodium quinoa HOM05D000139 ORTHO05D000103 1.8e-10 70.1 209 28.7
AUR62009917 Chenopodium quinoa HOM05D000139 ORTHO05D000103 1.8e-10 70.1 209 28.7
Peaxi162Scf00207g10149 Petunia axillaris HOM05D000139 ORTHO05D000103 1.8e-10 70.1 208 27.9
CAN.G825.1 Capsicum annuum HOM05D000139 ORTHO05D000103 2.3e-10 69.7 208 27.9
Nitab4.5_0002716g0040 Nicotiana tabacum HOM05D000139 ORTHO05D000103 2.3e-10 69.7 208 27.9
Cpa.g.sc25.144 Carica papaya HOM05D000139 ORTHO05D000103 3.1e-10 69.3 208 28.4
Nitab4.5_0005153g0060 Nicotiana tabacum HOM05D000139 ORTHO05D000103 3.1e-10 69.3 208 27.9
Nitab4.5_0006232g0060 Nicotiana tabacum HOM05D000139 ORTHO05D000103 3.1e-10 69.3 208 27.9
Gohir.A05G139200 Gossypium hirsutum HOM05D000139 ORTHO05D000103 4.0e-10 68.9 208 27.9
GSVIVG01016723001 Vitis vinifera HOM05D000139 ORTHO05D000103 4.0e-10 68.9 208 28.4
CiPaw.01G216400 Carya illinoinensis HOM05D000139 ORTHO05D000103 5.2e-10 68.6 208 26.9
DCAR_022669 Daucus carota HOM05D000139 ORTHO05D000103 6.8e-10 68.2 208 29.3
Medtr8g021330 Medicago truncatula HOM05D000139 ORTHO05D000103 6.8e-10 68.2 208 27.4
Nitab4.5_0002795g0010 Nicotiana tabacum HOM05D000139 ORTHO05D000103 6.8e-10 68.2 208 27.4
vmacro15049 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 6.8e-10 68.2 208 27.4
Actinidia32201 Actinidia chinensis HOM05D000139 ORTHO05D000103 8.9e-10 67.8 167 32.3
MELO3C022677.2 Cucumis melo HOM05D000139 ORTHO05D000103 8.9e-10 67.8 208 27.9
CsaV3_3G030800 Cucumis sativus L. HOM05D000139 ORTHO05D000103 8.9e-10 67.8 208 27.9
Lsat_1_v5_gn_5_135860 Lactuca sativa HOM05D000139 ORTHO05D000103 1.2e-09 67.4 209 26.8
Ciclev10025154m.g Citrus clementina HOM05D000139 ORTHO05D000103 1.5e-09 67.0 208 26.9
Duzib160G0694 Durio zibethinus HOM05D000139 ORTHO05D000103 1.5e-09 67.0 208 26.4
Glyma.07G041100 Glycine max HOM05D000139 ORTHO05D000103 2.0e-09 66.6 208 28.8
Lsat_1_v5_gn_1_37860 Lactuca sativa HOM05D000139 ORTHO05D000103 2.0e-09 66.6 208 27.4
Lj3g0023732 Lotus japonicus HOM05D000139 ORTHO05D000103 2.0e-09 66.6 208 27.9
Sc12g0010750 Simmondsia chinensis HOM05D000139 ORTHO05D000103 2.0e-09 66.6 208 27.9
SGA_v2.0_scaffold71G23888 Striga asiatica HOM05D000139 ORTHO05D000103 2.0e-09 66.6 209 28.2
Dinv20417 Davidia involucrata HOM05D000139 ORTHO05D000103 2.6e-09 66.2 216 27.3
TWI23G0495 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 2.6e-09 66.2 208 28.4
DCAR_026421 Daucus carota HOM05D000139 ORTHO05D000103 3.4e-09 65.9 208 26.9
Glyma.16G009800 Glycine max HOM05D000139 ORTHO05D000103 3.4e-09 65.9 208 27.9
EL10Ac7g16439 Beta vulgaris HOM05D000139 ORTHO05D000103 4.4e-09 65.5 209 28.7
ClCG07G014500 Citrullus lanatus HOM05D000139 ORTHO05D000103 7.5e-09 64.7 208 27.4
VMungo0331G0518 Vigna mungo HOM05D000139 ORTHO05D000103 7.5e-09 64.7 208 28.8
Oeu006736.1 Olea europaea HOM05D000139 ORTHO05D000103 9.8e-09 64.3 209 27.8
Sed0014349 Sechium edule HOM05D000139 ORTHO05D000103 9.8e-09 64.3 208 27.9
Ca_23404_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 1.3e-08 63.9 208 27.4
QL05p003853 Quercus lobata HOM05D000139 ORTHO05D000103 1.3e-08 63.9 209 27.3
Hma1.2p1_2833F.1_g329250 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 1.7e-08 63.5 209 28.2
Lalb_Chr04g0253701 Lupinus albus HOM05D000139 ORTHO05D000103 1.7e-08 63.5 208 27.4
Phvul.010G127600 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 1.7e-08 63.5 208 28.4
Solyc03g122240.3 Solanum lycopersicum HOM05D000139 ORTHO05D000103 2.2e-08 63.2 61 54.1
AT3G14090 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 2.9e-08 62.8 211 26.5
MSTRG.10934 Avicennia marina HOM05D000139 ORTHO05D000103 2.9e-08 62.8 61 55.7
ATR0006G041 Amborella trichopoda HOM05D000139 ORTHO05D000103 6.4e-08 61.6 66 47.0
A05p35350 Brassica napus HOM05D000139 ORTHO05D000103 6.4e-08 61.6 208 26.4
C05p53540 Brassica napus HOM05D000139 ORTHO05D000103 6.4e-08 61.6 208 26.4
BolC5t34031H Brassica oleracea HOM05D000139 ORTHO05D000103 6.4e-08 61.6 208 26.4
HanXRQChr04g0094381 Helianthus annuus HOM05D000139 ORTHO05D000103 6.4e-08 61.6 208 26.9
SalBow6G2360 Salvia bowleyana HOM05D000139 ORTHO05D000103 6.4e-08 61.6 61 54.1
SalBow6G6178 Salvia bowleyana HOM05D000139 ORTHO05D000103 6.4e-08 61.6 61 54.1
TAR383G0455 Trochodendron aralioides HOM05D000139 ORTHO05D000103 6.4e-08 61.6 66 48.5
Aa31LG4G2800 Aethionema arabicum HOM05D000139 ORTHO05D000103 8.3e-08 61.2 208 26.9
AL3G26320 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 8.3e-08 61.2 211 26.1
Lsat_1_v5_gn_4_92560 Lactuca sativa HOM05D000139 ORTHO05D000103 8.3e-08 61.2 208 26.4
PSO386G0142 Papaver somniferum HOM05D000139 ORTHO05D000103 8.3e-08 61.2 66 48.5
PSO724G1234 Papaver somniferum HOM05D000139 ORTHO05D000103 8.3e-08 61.2 66 48.5
CSS0007039 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 1.4e-07 60.5 61 52.5
Lj9P534T43 Lonicera japonica HOM05D000139 ORTHO05D000103 1.4e-07 60.5 61 54.1
Oeu057903.2 Olea europaea HOM05D000139 ORTHO05D000103 1.4e-07 60.5 209 27.3
BraA05t22345Z Brassica rapa HOM05D000139 ORTHO05D000103 1.9e-07 60.1 208 26.0
Migut.I01102 Erythranthe guttata HOM05D000139 ORTHO05D000103 1.9e-07 60.1 61 50.8
Dinv13575 Davidia involucrata HOM05D000139 ORTHO05D000103 2.4e-07 59.7 66 51.5
Dinv13578 Davidia involucrata HOM05D000139 ORTHO05D000103 2.4e-07 59.7 66 51.5
Manes.04G147700 Manihot esculenta HOM05D000139 ORTHO05D000103 2.4e-07 59.7 188 27.1
THA.LOC104812259 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 2.4e-07 59.7 208 26.0
Carub.0003s1370 Capsella rubella HOM05D000139 ORTHO05D000103 3.2e-07 59.3 211 25.1
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 3.2e-07 59.3 194 30.9
Psat4g167560 Pisum sativum HOM05D000139 ORTHO05D000103 3.2e-07 59.3 208 26.0
Dinv30713 Davidia involucrata HOM05D000139 ORTHO05D000103 4.1e-07 58.9 60 53.3
THA.LOC104815618 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 4.1e-07 58.9 61 50.8
unitig_32.g11015 Utricularia gibba HOM05D000139 ORTHO05D000103 4.1e-07 58.9 61 49.2
Carub.0001s4332 Capsella rubella HOM05D000139 ORTHO05D000103 5.4e-07 58.5 208 26.4
CiPaw.02G134100 Carya illinoinensis HOM05D000139 ORTHO05D000103 5.4e-07 58.5 61 50.8
MBI13_g00697_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 5.4e-07 58.5 66 47.0
MSTRG.22537 Avicennia marina HOM05D000139 ORTHO05D000103 7.1e-07 58.2 61 50.8
TPR.G16755 Trifolium pratense HOM05D000139 ORTHO05D000103 7.1e-07 58.2 61 50.8
CARHR065420 Cardamine hirsuta HOM05D000139 ORTHO05D000103 9.2e-07 57.8 61 52.5
Oeu005582.1 Olea europaea HOM05D000139 ORTHO05D000103 9.2e-07 57.8 212 26.4
vmacro22026 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 9.2e-07 57.8 61 54.1
PSO104G0208 Papaver somniferum HOM05D000139 ORTHO05D000103 1.2e-06 57.4 66 47.0
PSO421G0743 Papaver somniferum HOM05D000139 ORTHO05D000103 1.2e-06 57.4 66 47.0
Sp3g12350 Schrenkiella parvula HOM05D000139 ORTHO05D000103 1.2e-06 57.4 61 50.8
SEGI_22722 Sequoiadendron giganteum HOM05D000139 ORTHO05D000103 1.2e-06 57.4 66 43.9
A08p01240 Brassica napus HOM05D000139 ORTHO05D000103 1.6e-06 57.0 61 50.8
BraA08t32175Z Brassica rapa HOM05D000139 ORTHO05D000103 1.6e-06 57.0 61 50.8
Thhalv10011317m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 1.6e-06 57.0 208 26.4
Rhsim12G0211300 Rhododendron simsii HOM05D000139 ORTHO05D000103 1.6e-06 57.0 61 52.5
AL2G32160 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
AT1G72470 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
BcaB03g15669 Brassica carinata HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
BcaC08g45707 Brassica carinata HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
A07p30210 Brassica napus HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
C06p34960 Brassica napus HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
BolC6t38595H Brassica oleracea HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
BraA07t30658Z Brassica rapa HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
Carub.0002s1932 Capsella rubella HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
Thhalv10019854m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
Sp5g27550 Schrenkiella parvula HOM05D000139 ORTHO05D000103 2.1e-06 56.6 61 50.8
Aa31LG10G1310 Aethionema arabicum HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 49.2
AL1G62790 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
AT1G54090 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
BcaC01g01432 Brassica carinata HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
C02p26640 Brassica napus HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
C03p91960 Brassica napus HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
BolC3t21516H Brassica oleracea HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
CARHR044420 Cardamine hirsuta HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
CARHR088950 Cardamine hirsuta HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
Rhsim12G0211500 Rhododendron simsii HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
Sp1g40530 Schrenkiella parvula HOM05D000139 ORTHO05D000103 2.7e-06 56.2 61 50.8
BcaB04g17030 Brassica carinata HOM05D000139 ORTHO05D000103 3.5e-06 55.8 61 50.8
QL10p003713 Quercus lobata HOM05D000139 ORTHO05D000103 3.5e-06 55.8 63 44.4
Sed0003184 Sechium edule HOM05D000139 ORTHO05D000103 3.5e-06 55.8 209 25.8
vmacro22025 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 3.5e-06 55.8 61 49.2
Os09g0439600 Oryza sativa ssp. japonica HOM05D000139 ORTHO05D000103 4.6e-06 55.5 66 43.9
BcaC05g29124 Brassica carinata HOM05D000139 ORTHO05D000103 6.0e-06 55.1 61 49.2
CDE05G3169 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 6.0e-06 55.1 61 42.6
Dinv36142 Davidia involucrata HOM05D000139 ORTHO05D000103 6.0e-06 55.1 82 45.1


User provided reference genes

Program Settings