Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 0.0e+00 1256.1 661 100.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.2e-309 1065.1 650 87.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.7e-296 1021.1 665 81.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.7e-293 1012.3 667 80.1
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 8.2e-288 993.4 663 80.5
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.4e-287 992.6 661 78.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.4e-271 939.5 663 77.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.5e-268 928.7 660 73.6
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.4e-265 918.3 626 76.7
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.7e-262 908.7 667 70.0
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 6.5e-261 904.0 661 71.6
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.5e-260 902.9 665 71.4
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.6e-259 898.3 656 72.9
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.0e-258 896.7 655 72.1
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 8.8e-258 893.6 678 72.7
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.8e-256 888.6 650 71.7
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 6.3e-256 887.5 679 72.3
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.1e-255 886.7 660 71.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.4e-255 886.3 680 70.3
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.8e-255 885.9 659 72.4
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.1e-255 885.2 664 70.9
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.1e-255 885.2 660 70.9
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 7.0e-255 884.0 652 71.3
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.2e-254 883.2 668 71.0
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 4.5e-254 881.3 671 71.5
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.9e-254 880.9 650 71.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.0e-253 880.2 664 69.6
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 3.8e-253 878.2 667 70.3
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.3e-252 875.2 667 70.2
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.6e-251 871.7 649 71.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.0e-250 868.2 660 70.5
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 5.2e-250 867.8 704 66.6
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 8.9e-250 867.1 697 66.6
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 7.5e-249 864.0 660 69.5
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.3e-248 863.2 669 68.9
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.4e-247 859.8 669 70.9
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-247 859.4 649 70.4
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 7.0e-247 857.4 644 71.1
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.3e-245 853.2 647 69.1
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.3e-245 853.2 708 65.8
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-244 850.1 634 71.3
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 2.5e-244 849.0 677 67.8
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 7.3e-244 847.4 657 68.5
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.8e-243 845.5 661 68.8
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 4.7e-243 844.7 658 67.9
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.4e-242 843.2 657 67.9
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 3.1e-242 842.0 657 67.4
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 5.2e-242 841.3 663 66.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.5e-241 839.7 665 67.5
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.0e-241 839.3 663 66.4
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 4.4e-241 838.2 657 67.4
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 7.5e-241 837.4 657 67.3
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 9.8e-241 837.0 658 67.5
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 1.3e-240 836.6 667 68.1
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 6.4e-240 834.3 663 67.3
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.4e-239 833.2 650 68.9
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 3.2e-239 832.0 657 67.6
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 5.4e-239 831.2 658 66.9
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 2.0e-238 829.3 658 66.9
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 6.6e-237 824.3 662 65.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 4.0e-234 815.1 657 66.4
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.4e-233 811.6 657 66.4
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 5.8e-233 811.2 660 65.2
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 9.8e-233 810.4 642 67.1
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.7e-232 809.7 659 64.2
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 7.1e-231 804.3 654 64.8
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.2e-230 803.5 663 64.9
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 3.5e-230 802.0 652 65.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.0e-229 800.4 657 64.4
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.3e-229 800.0 652 65.3
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-229 799.7 654 64.7
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 5.1e-229 798.1 662 64.0
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 6.6e-229 797.7 654 64.4
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.5e-228 796.6 655 64.9
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 4.3e-228 795.0 651 64.4
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 5.2e-226 788.1 687 61.3
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 6.8e-226 787.7 655 64.3
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.5e-225 786.6 655 63.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 7.6e-225 784.3 627 67.1
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 9.9e-225 783.9 651 63.3
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-224 783.5 652 63.7
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-224 782.7 591 68.7
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.9e-223 779.6 662 64.4
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 2.4e-223 779.2 653 63.1
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 2.4e-223 779.2 653 63.1
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-222 776.2 664 64.8
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 4.6e-222 775.0 664 61.3
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.7e-221 773.1 651 62.8
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 2.3e-221 772.7 638 63.8
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 2.5e-220 769.2 541 74.9
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 7.3e-220 767.7 652 64.6
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.6e-219 766.5 662 62.8
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.7e-219 765.0 661 60.5
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-218 763.1 641 62.9
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 2.6e-217 759.2 643 62.7
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 5.8e-217 758.1 568 71.8
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 3.8e-216 755.4 662 62.5
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 9.3e-215 750.7 575 71.0
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.0e-213 747.3 539 72.4
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 9.9e-209 730.7 664 63.3
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.5e-206 722.2 566 70.8
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 6.6e-205 718.0 516 73.8
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 5.8e-201 704.9 630 63.5
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 5.6e-196 688.3 537 66.3
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 4.6e-190 668.7 532 64.7
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 4.3e-188 662.1 645 56.7
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.4e-186 657.1 661 53.9
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.3e-180 636.0 656 53.0
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 7.7e-177 624.8 658 52.3
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 5.1e-173 612.1 624 52.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.1e-166 588.6 399 76.4
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.1e-158 563.5 654 47.9
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 6.7e-157 558.5 398 76.6
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.3e-149 533.5 651 46.5
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.7e-147 527.3 651 46.4
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.8e-147 526.6 431 63.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 2.8e-147 526.6 648 47.4
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.6e-145 520.8 653 47.6
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.0e-141 508.1 660 43.6
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.9e-131 473.4 397 63.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.4e-100 370.2 250 78.4
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 8.7e-96 355.5 252 74.6
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 3.4e-92 343.6 614 38.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.4e-82 310.8 429 45.0
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 5.8e-76 289.7 439 42.4
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.7e-75 288.1 217 73.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.3e-71 273.5 284 53.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-68 264.6 383 45.2
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 3.9e-64 250.4 612 34.0
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 4.5e-60 236.9 194 68.6
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 5.7e-55 219.9 251 49.0
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.2e-54 218.0 236 55.9
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 2.0e-52 211.5 308 45.1
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 5.9e-52 209.9 268 48.1
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-50 205.7 209 56.0
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.0e-43 180.3 133 72.2
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.1e-42 179.1 257 45.1
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.0e-39 168.3 117 78.6
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.0e-39 168.3 167 54.5
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.6e-36 158.7 109 74.3
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-33 148.3 187 48.1
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 3.7e-30 137.5 109 61.5
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 7.0e-29 133.3 616 25.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 3.2e-26 124.4 96 69.8
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-23 115.2 134 53.7
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.4e-23 114.0 132 52.3
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.7e-22 110.9 132 53.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 8.3e-22 109.8 148 48.6
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.0e-19 102.8 80 68.8
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 2.9e-19 101.3 88 61.4
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.5e-18 99.0 75 70.7
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.2e-16 90.5 66 72.7
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-15 88.6 68 70.6
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 8.3e-14 83.2 71 57.7
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 5.4e-13 80.5 68 52.9
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-11 75.5 49 75.5
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.7e-11 75.5 65 60.0
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-10 72.0 68 47.1
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 4.3e-10 70.9 74 51.4
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 1.6e-09 68.9 54 55.6
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 1.6e-09 68.9 53 75.5
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 4.7e-09 67.4 457 21.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 6.2e-09 67.0 66 56.1
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 1.1e-08 66.2 52 59.6
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 5.2e-08 63.9 49 65.3
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 4.9e-06 57.4 44 56.8
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 8.3e-06 56.6 66 50.0
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 8.3e-06 56.6 64 50.0
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 8.3e-06 56.6 64 50.0


User provided reference genes

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