Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 2.7e-41 171.8 99 100.0
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 6.0e-17 90.9 99 63.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 7.8e-17 90.5 96 62.5
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 7.8e-17 90.5 96 59.4
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.3e-16 89.0 94 61.7
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 4.3e-15 84.7 97 60.8
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.2e-14 83.2 93 58.1
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.6e-14 82.8 93 62.4
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.6e-14 82.8 94 62.8
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.1e-14 82.4 95 56.8
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 4.7e-14 81.3 93 57.0
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.4e-13 79.7 92 52.2
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.4e-13 79.7 93 52.7
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.8e-13 79.3 94 60.6
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.3e-13 79.0 99 58.6
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.5e-12 76.3 95 52.6
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.6e-12 75.5 95 52.6
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.4e-12 75.1 94 55.3
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.3e-11 73.2 95 54.7
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.7e-11 72.8 95 54.7
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.7e-11 72.8 95 54.7
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.7e-11 72.8 95 54.7
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.7e-11 72.8 96 54.2
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.2e-11 72.4 94 56.4
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.2e-11 72.4 94 53.2
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.7e-11 71.6 99 52.5
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 3.7e-11 71.6 97 55.7
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 3.7e-11 71.6 94 56.4
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 4.9e-11 71.2 92 46.7
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 4.9e-11 71.2 92 50.0
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 4.9e-11 71.2 95 51.6
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 4.9e-11 71.2 96 57.3
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 6.4e-11 70.9 97 53.6
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 6.4e-11 70.9 92 50.0
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 8.3e-11 70.5 92 48.9
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.1e-10 70.1 93 51.6
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-10 69.7 95 52.6
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-10 69.7 95 50.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.9e-10 69.3 92 50.0
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.9e-10 69.3 92 50.0
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.4e-10 68.9 94 52.1
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 4.1e-10 68.2 97 51.5
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 4.1e-10 68.2 94 53.2
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 4.1e-10 68.2 94 52.1
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 5.4e-10 67.8 93 53.8
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 5.4e-10 67.8 95 52.6
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 7.1e-10 67.4 93 48.4
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 9.2e-10 67.0 97 51.5
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 9.2e-10 67.0 93 43.0
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.2e-09 66.6 97 51.5
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.6e-09 66.2 97 50.5
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.7e-09 65.5 98 53.1
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.7e-09 65.5 92 47.8
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.7e-09 65.5 93 44.1
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 4.6e-09 64.7 95 46.3
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 4.6e-09 64.7 96 55.2
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 6.0e-09 64.3 94 48.9
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 6.0e-09 64.3 95 51.6
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 6.0e-09 64.3 95 50.5
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.8e-09 63.9 101 48.5
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 7.8e-09 63.9 95 51.6
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 7.8e-09 63.9 95 52.6
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.0e-08 63.5 94 48.9
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.3e-08 63.2 98 50.0
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-08 63.2 98 50.0
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.3e-08 63.2 98 50.0
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.3e-08 63.2 94 51.1
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.3e-08 63.2 94 44.7
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.3e-08 63.2 94 44.7
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.7e-08 62.8 97 48.5
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.7e-08 62.8 92 47.8
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.7e-08 62.8 96 55.2
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.7e-08 62.8 92 46.7
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.3e-08 62.4 95 50.5
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 3.0e-08 62.0 96 51.0
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 3.0e-08 62.0 95 48.4
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 3.9e-08 61.6 98 49.0
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 3.9e-08 61.6 96 50.0
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.9e-08 61.6 94 47.9
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 5.1e-08 61.2 93 46.2
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 5.1e-08 61.2 96 53.1
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 6.6e-08 60.8 99 50.5
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 6.6e-08 60.8 99 50.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 6.6e-08 60.8 98 50.0
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.5e-07 59.7 94 52.1
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.5e-07 59.7 95 51.6
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.9e-07 59.3 96 53.1
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.5e-07 58.9 95 44.2
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.5e-07 58.9 95 44.2
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 4.3e-07 58.2 95 48.4
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 5.6e-07 57.8 92 46.7
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 5.6e-07 57.8 92 46.7
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 7.3e-07 57.4 95 47.4
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 7.3e-07 57.4 95 44.2
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 7.3e-07 57.4 95 47.4
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.2e-06 56.6 90 45.6
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 2.1e-06 55.8 92 44.6
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.1e-06 55.8 94 46.8
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.8e-06 55.5 92 45.7
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.6e-06 55.1 93 45.2
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 3.6e-06 55.1 101 49.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 4.7e-06 54.7 98 45.9
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 6.2e-06 54.3 92 43.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 6.2e-06 54.3 95 44.2
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 6.2e-06 54.3 93 49.5
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 8.1e-06 53.9 93 44.1
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 8.1e-06 53.9 94 46.8


User provided reference genes

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