Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 1.3e-247 859.4 467 100.0
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 7.1e-161 571.2 470 71.5
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.5e-134 483.0 478 61.7
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.1e-120 436.8 478 58.6
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 3.9e-119 432.6 478 57.9
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 2.0e-118 430.3 478 57.7
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.3e-117 427.6 484 57.9
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.4e-116 423.3 385 65.5
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.7e-114 417.2 471 55.2
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 3.3e-110 402.9 474 53.8
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.4e-110 402.5 474 53.2
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 3.7e-109 399.4 483 54.0
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.7e-106 390.6 410 57.8
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.5e-105 387.5 472 52.1
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.5e-105 387.5 472 52.1
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 5.5e-105 385.6 485 54.6
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.7e-104 383.3 477 54.5
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 3.6e-104 382.9 472 54.4
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 6.1e-104 382.1 479 53.2
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.2e-103 379.0 368 61.4
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 3.5e-99 366.3 474 50.2
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.5e-99 366.3 460 51.7
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.1e-97 361.3 470 50.4
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.5e-97 360.9 477 49.5
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 2.5e-97 360.1 478 49.0
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 7.2e-97 358.6 475 48.6
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 1.6e-96 357.5 466 53.9
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.7e-96 356.7 465 52.3
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 3.6e-96 356.3 459 50.1
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 3.6e-96 356.3 470 48.7
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.0e-95 354.8 465 49.2
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 3.4e-94 349.7 470 50.4
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.3e-93 347.8 463 51.0
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.2e-93 347.1 493 50.1
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 4.9e-93 345.9 460 49.3
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 8.3e-93 345.1 488 49.8
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.4e-92 343.6 464 50.9
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 3.1e-92 343.2 475 50.5
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.1e-92 342.8 429 50.6
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.7e-91 338.6 455 49.9
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.0e-90 338.2 457 47.5
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.7e-90 337.4 479 47.6
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 2.3e-90 337.0 470 49.1
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.9e-90 336.7 510 48.0
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 3.8e-90 336.3 464 47.8
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 3.8e-90 336.3 510 48.4
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 5.0e-90 335.9 448 49.8
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 8.6e-90 335.1 483 49.9
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 8.6e-90 335.1 459 48.6
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 9.5e-89 331.6 470 49.6
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.6e-88 329.7 479 47.2
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 4.7e-88 329.3 500 47.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 6.1e-88 328.9 498 46.8
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 2.3e-87 327.0 485 45.4
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 5.2e-87 325.9 486 46.1
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.5e-86 324.3 478 47.7
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.9e-85 320.1 478 46.9
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 6.4e-85 318.9 450 49.6
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-84 318.2 451 48.3
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 2.4e-84 317.0 452 46.9
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 2.4e-84 317.0 460 45.4
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.6e-83 314.3 468 45.9
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.0e-83 313.9 472 48.7
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 8.6e-82 308.5 416 48.6
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.1e-81 308.1 458 45.6
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.5e-81 307.8 486 43.6
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.9e-81 307.4 423 49.4
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.9e-81 307.4 423 49.4
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 2.3e-79 300.4 351 53.3
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.3e-79 300.4 367 51.5
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.5e-78 297.7 484 45.5
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 3.4e-78 296.6 475 44.8
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 4.9e-77 292.7 536 42.5
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 3.2e-76 290.0 373 49.6
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 3.2e-76 290.0 468 46.4
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.0e-75 287.3 514 43.2
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.9e-74 283.1 484 44.6
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 5.0e-74 282.7 499 42.3
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 9.5e-73 278.5 464 43.1
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.2e-72 278.1 381 46.7
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.7e-72 276.2 464 44.2
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.4e-71 274.6 406 46.1
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 4.4e-70 269.6 480 44.8
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.4e-70 269.6 359 46.2
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.3e-69 268.1 491 42.2
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.4e-68 264.6 374 47.1
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.9e-68 264.2 361 48.2
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 3.5e-67 260.0 473 43.3
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.0e-66 258.5 360 47.2
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.5e-65 253.8 360 46.1
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.2e-62 245.0 332 48.8
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.5e-62 244.6 475 42.1
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.2e-60 236.9 453 40.0
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 7.1e-60 235.7 280 53.2
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 9.2e-60 235.3 458 40.2
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 3.5e-59 233.4 502 37.3
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.0e-59 232.6 293 52.6
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 2.8e-56 223.8 461 41.2
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 8.1e-56 222.2 374 39.8
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.2e-54 218.4 465 37.6
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 3.4e-54 216.9 453 38.6
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 4.9e-53 213.0 490 37.1
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.6e-51 208.0 486 36.4
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 6.0e-51 206.1 326 44.2
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.8e-47 194.5 454 35.7
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.4e-44 184.9 444 34.2
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.6e-43 181.4 430 35.8
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 1.7e-42 177.9 444 35.8
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 3.9e-42 176.8 453 33.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 3.9e-42 176.8 464 33.4
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 3.9e-42 176.8 496 31.2
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 2.5e-41 174.1 438 34.5
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.5e-41 174.1 296 43.2
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 3.6e-40 170.2 460 30.9
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 2.6e-38 164.1 452 33.2
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 3.4e-38 163.7 451 33.5
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 4.5e-38 163.3 214 54.7
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 9.9e-38 162.2 452 33.2
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.2e-37 161.0 375 36.3
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.9e-37 159.8 378 36.2
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 7.1e-36 156.0 220 44.1
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 3.5e-35 153.7 438 32.4
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 6.0e-35 152.9 444 32.4
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.3e-34 151.8 451 32.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-33 148.7 438 32.9
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 2.5e-33 147.5 438 32.9
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.3e-32 145.2 214 43.0
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.6e-30 137.5 251 41.8
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 5.8e-30 136.3 456 31.1
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 7.6e-30 136.0 127 55.9
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.3e-29 135.2 449 30.3
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 8.4e-29 132.5 305 33.1
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.2e-28 130.2 283 41.0
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 7.9e-27 125.9 153 51.6
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 3.7e-24 117.1 124 58.9
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.2e-21 107.8 181 46.4
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 6.7e-18 96.3 146 44.5
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.9e-17 94.7 99 46.5
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.8e-13 80.5 287 28.2
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 5.1e-10 70.1 81 54.3
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 4.8e-08 63.5 59 52.5
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 8.2e-08 62.8 189 30.7
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 5.9e-06 56.6 318 24.5


User provided reference genes

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