Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 2.8e-192 675.2 379 100.0
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.6e-142 510.0 380 73.2
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.9e-136 488.4 387 75.5
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.9e-136 488.4 385 74.5
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.1e-134 483.0 366 78.1
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 2.5e-132 476.1 385 67.8
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 2.0e-129 466.5 397 65.0
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 2.9e-128 462.6 401 66.3
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 2.9e-128 462.6 349 77.7
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 8.4e-128 461.1 398 64.8
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.1e-127 460.7 398 64.8
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.5e-126 455.7 404 62.4
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 1.8e-125 453.4 400 63.8
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 3.0e-125 452.6 383 65.3
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.1e-122 444.1 381 64.8
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.1e-122 444.1 358 71.8
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 1.4e-122 443.7 389 66.3
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 2.4e-122 443.0 389 66.6
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 2.4e-122 443.0 395 64.6
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 3.1e-122 442.6 387 63.0
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 3.1e-122 442.6 413 63.9
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 4.0e-122 442.2 388 62.6
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 9.0e-122 441.0 394 66.0
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 1.2e-121 440.7 395 65.8
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.6e-121 439.5 389 61.2
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 9.3e-119 431.0 396 63.9
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 1.6e-118 430.3 410 63.9
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 1.6e-118 430.3 398 64.1
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 7.9e-118 427.9 382 66.0
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 8.7e-117 424.5 391 61.4
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 1.5e-116 423.7 451 57.4
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 2.5e-116 422.9 439 56.5
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 2.5e-116 422.9 387 61.8
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 4.3e-116 422.2 392 58.7
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 2.1e-115 419.9 391 59.3
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 1.1e-114 417.5 379 59.4
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 2.4e-114 416.4 391 58.6
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 3.1e-114 416.0 470 53.8
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 4.5e-113 412.1 447 55.5
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 5.8e-113 411.8 352 63.4
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 5.8e-113 411.8 387 61.0
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 7.6e-113 411.4 402 61.2
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 1.0e-112 411.0 395 63.5
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 5.5e-111 405.2 397 62.2
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 7.1e-111 404.8 389 57.3
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 7.1e-111 404.8 361 66.2
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 1.6e-110 403.7 388 60.1
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 2.1e-110 403.3 422 55.5
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 6.0e-110 401.7 372 58.3
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 1.3e-109 400.6 388 61.9
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.3e-109 400.6 392 55.4
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.8e-109 400.2 360 65.8
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 3.0e-109 399.4 381 60.9
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 8.7e-109 397.9 401 60.8
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 2.5e-108 396.4 383 61.1
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 2.5e-108 396.4 372 57.5
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 4.3e-108 395.6 359 61.3
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 5.7e-108 395.2 380 61.3
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 7.4e-108 394.8 381 62.5
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 2.8e-107 392.9 366 58.5
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 3.7e-107 392.5 357 60.5
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 6.3e-107 391.7 361 58.2
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 6.3e-107 391.7 361 58.2
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 6.3e-107 391.7 378 57.1
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 1.4e-106 390.6 389 61.2
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 2.4e-106 389.8 387 58.1
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 6.9e-106 388.3 380 57.4
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 9.0e-106 387.9 379 58.0
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 3.4e-105 386.0 385 59.5
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 4.5e-105 385.6 356 61.2
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.0e-104 384.4 363 57.6
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.0e-104 384.4 375 56.8
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.7e-104 383.6 394 58.4
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 2.9e-104 382.9 358 62.0
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 2.9e-104 382.9 357 58.8
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 5.0e-104 382.1 368 59.8
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 8.5e-104 381.3 385 59.2
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 4.2e-103 379.0 372 55.1
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 2.7e-102 376.3 381 54.1
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 3.6e-102 375.9 348 61.2
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 3.6e-102 375.9 386 57.0
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 4.6e-102 375.6 324 61.7
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 6.1e-102 375.2 372 59.4
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.0e-101 374.4 377 57.0
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.4e-101 374.0 373 58.7
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 8.8e-101 371.3 416 55.0
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 3.3e-100 369.4 360 56.4
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 1.7e-99 367.1 395 54.4
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 2.8e-99 366.3 363 60.6
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 5.3e-98 362.1 360 53.9
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 3.4e-97 359.4 338 61.8
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 1.7e-96 357.1 407 52.8
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 8.5e-96 354.8 370 53.2
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 2.5e-95 353.2 387 61.0
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 9.4e-95 351.3 385 61.3
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.0e-93 347.8 357 53.5
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 2.0e-92 343.6 357 53.8
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 4.1e-90 335.9 363 52.3
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 3.4e-89 332.8 624 37.3
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 4.5e-89 332.4 414 47.3
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 9.4e-87 324.7 451 48.3
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 3.9e-85 319.3 317 57.1
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 3.8e-80 302.8 354 49.4
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 6.1e-78 295.4 363 49.6
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 4.7e-70 269.2 166 80.1
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 8.6e-64 248.4 145 84.1
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 3.6e-62 243.0 135 88.1
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 2.8e-54 216.9 338 39.6
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 8.9e-53 211.8 293 52.2
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 3.9e-48 196.4 361 34.6
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.9e-47 194.1 390 37.9
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 3.6e-46 189.9 358 34.6
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 3.7e-43 179.9 112 78.6
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 8.3e-43 178.7 356 34.3
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 4.3e-31 139.8 228 35.1
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.2e-30 138.3 104 66.3
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 2.1e-30 137.5 230 41.7
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 2.1e-25 120.9 179 39.7
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.4e-21 108.2 205 34.1
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 1.8e-21 107.8 75 65.3
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 2.4e-21 107.5 58 91.4
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.4e-21 107.5 64 79.7
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.1e-18 98.6 64 78.1
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 9.3e-18 95.5 49 85.7
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 7.8e-17 92.4 175 32.0


User provided reference genes

Program Settings