Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22127 Davidia involucrata HOM05D000005 ORTHO05D045138 8.2e-148 526.9 248 100.0
Dinv22128 Davidia involucrata HOM05D000005 ORTHO05D000012 4.6e-74 282.0 197 71.1
Dinv11663 Davidia involucrata HOM05D000005 ORTHO05D000012 1.9e-51 206.8 207 56.0
Dinv10510 Davidia involucrata HOM05D000005 ORTHO05D045138 3.2e-19 99.8 145 37.2
RcHm_v2.0_Chr1g0322651 Rosa chinensis HOM05D000005 ORTHO05D000012 2.0e-16 90.5 210 31.0
Dinv20734 Davidia involucrata HOM05D000005 ORTHO05D000012 3.3e-16 89.7 210 32.4
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 3.3e-16 89.7 204 32.8
RcHm_v2.0_Chr1g0329001 Rosa chinensis HOM05D000005 ORTHO05D000012 9.7e-16 88.2 211 30.3
RcHm_v2.0_Chr1g0322521 Rosa chinensis HOM05D000005 ORTHO05D001748 1.3e-15 87.8 211 30.3
Prupe.8G046500 Prunus persica HOM05D000005 ORTHO05D000012 2.8e-15 86.7 152 35.5
RcHm_v2.0_Chr1g0323501 Rosa chinensis HOM05D000005 ORTHO05D001748 3.7e-15 86.3 211 29.4
FvH4_2g00570 Fragaria vesca HOM05D000005 ORTHO05D000012 8.2e-15 85.1 210 28.6
Prupe.8G005100 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-14 84.3 195 32.3
RcHm_v2.0_Chr1g0321301 Rosa chinensis HOM05D000005 ORTHO05D001748 1.4e-14 84.3 211 29.4
RcHm_v2.0_Chr1g0322491 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-14 84.0 211 29.4
RcHm_v2.0_Chr1g0322781 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-14 84.0 211 29.4
RcHm_v2.0_Chr1g0328941 Rosa chinensis HOM05D000005 ORTHO05D001748 2.4e-14 83.6 211 28.9
RcHm_v2.0_Chr1g0322941 Rosa chinensis HOM05D000005 ORTHO05D000012 5.3e-14 82.4 211 28.9
RcHm_v2.0_Chr6g0250621 Rosa chinensis HOM05D000005 ORTHO05D000012 5.3e-14 82.4 242 28.1
RcHm_v2.0_Chr1g0323411 Rosa chinensis HOM05D000005 ORTHO05D001748 1.2e-13 81.3 206 29.6
Oeu005306.1 Olea europaea HOM05D000005 ORTHO05D000012 2.0e-13 80.5 200 29.0
Prupe.1G165300 Prunus persica HOM05D000005 ORTHO05D000012 2.6e-13 80.1 214 29.0
FAN27G2200 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.4e-13 79.7 241 27.0
Manes.02G199800 Manihot esculenta HOM05D000005 ORTHO05D000012 4.5e-13 79.3 207 35.3
RcHm_v2.0_Chr2g0101061 Rosa chinensis HOM05D000005 ORTHO05D000012 4.5e-13 79.3 234 27.4
Oeu001180.1 Olea europaea HOM05D000005 ORTHO05D000012 5.9e-13 79.0 200 30.0
RcHm_v2.0_Chr1g0323161 Rosa chinensis HOM05D000005 ORTHO05D000012 1.3e-12 77.8 211 28.4
QL11p010296 Quercus lobata HOM05D000005 ORTHO05D000012 1.7e-12 77.4 200 27.0
RcHm_v2.0_Chr6g0250551 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-12 77.4 242 27.7
RcHm_v2.0_Chr1g0322961 Rosa chinensis HOM05D000005 ORTHO05D000012 2.2e-12 77.0 211 28.4
QL11p010312 Quercus lobata HOM05D000005 ORTHO05D000012 2.9e-12 76.6 207 28.5
RcHm_v2.0_Chr6g0250931 Rosa chinensis HOM05D000005 ORTHO05D000012 2.9e-12 76.6 242 26.4
RcHm_v2.0_Chr6g0250871 Rosa chinensis HOM05D000005 ORTHO05D000012 3.8e-12 76.3 242 27.3
FAN24G3397 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.0e-12 75.9 236 27.1
QL11p010027 Quercus lobata HOM05D000005 ORTHO05D000012 8.5e-12 75.1 200 27.0
RcHm_v2.0_Chr6g0245331 Rosa chinensis HOM05D000005 ORTHO05D001748 1.4e-11 74.3 195 30.3
ECA238G4717 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.9e-11 73.9 204 27.9
Prupe.8G046700 Prunus persica HOM05D000005 ORTHO05D000012 1.9e-11 73.9 200 30.5
QL10p029742 Quercus lobata HOM05D000005 ORTHO05D000012 1.9e-11 73.9 208 30.3
Dinv25475 Davidia involucrata HOM05D000005 ORTHO05D000012 4.2e-11 72.8 190 33.2
RcHm_v2.0_Chr1g0322381 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-11 72.8 193 29.5
RcHm_v2.0_Chr6g0250681 Rosa chinensis HOM05D000005 ORTHO05D000012 4.2e-11 72.8 230 27.4
Lj7C417G11 Lonicera japonica HOM05D000001 ORTHO05D000003 5.5e-11 72.4 211 27.5
QL05p005294 Quercus lobata HOM05D000005 ORTHO05D013544 5.5e-11 72.4 231 28.6
RcHm_v2.0_Chr1g0322701 Rosa chinensis HOM05D000005 ORTHO05D001748 5.5e-11 72.4 161 29.8
FAN23G2629 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.2e-11 72.0 205 29.8
Nitab4.5_0000844g0060 Nicotiana tabacum HOM05D000005 ORTHO05D000012 7.2e-11 72.0 186 29.6
QL10p051095 Quercus lobata HOM05D000005 ORTHO05D000012 7.2e-11 72.0 210 26.7
QL09p001484 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-10 70.9 190 28.9
Potri.019G069200 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.1e-10 70.5 214 27.1
QL10p051120 Quercus lobata HOM05D000005 ORTHO05D000012 2.1e-10 70.5 200 28.0
CSS0012687 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D001748 2.7e-10 70.1 193 30.1
FvH4_1g22512 Fragaria vesca HOM05D000005 ORTHO05D000012 2.7e-10 70.1 207 32.4
QL03p008616 Quercus lobata HOM05D000005 ORTHO05D001748 7.9e-10 68.6 188 29.3
QL09p043675 Quercus lobata HOM05D000005 ORTHO05D000012 7.9e-10 68.6 197 27.4
CSS0010161 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.0e-09 68.2 210 27.1
QL05p014546 Quercus lobata HOM05D000005 ORTHO05D000012 1.0e-09 68.2 180 30.0
QL09p000751 Quercus lobata HOM05D000005 ORTHO05D000012 1.4e-09 67.8 205 27.8
RcHm_v2.0_Chr1g0322421 Rosa chinensis HOM05D000005 ORTHO05D001748 1.4e-09 67.8 170 28.8
GSVIVG01004877001 Vitis vinifera HOM05D000005 ORTHO05D000012 1.4e-09 67.8 198 27.3
QL09p051998 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-09 66.6 214 25.7
Dinv25477 Davidia involucrata HOM05D000005 ORTHO05D000012 3.9e-09 66.2 195 32.3
ECA238G3071 Erigeron canadensis HOM05D000005 ORTHO05D000012 5.1e-09 65.9 206 26.2
MD01G1190700 Malus domestica HOM05D000005 ORTHO05D015660 5.1e-09 65.9 193 28.5
MD10G1007200 Malus domestica HOM05D000005 ORTHO05D001748 5.1e-09 65.9 195 27.2
Peaxi162Scf00036g00711 Petunia axillaris HOM05D000005 ORTHO05D000012 5.1e-09 65.9 186 28.0
QL03p008768 Quercus lobata HOM05D000005 ORTHO05D000012 5.1e-09 65.9 206 27.2
RcHm_v2.0_Chr6g0246391 Rosa chinensis HOM05D000005 ORTHO05D000012 5.1e-09 65.9 204 30.4
CSS0030182 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D013544 6.7e-09 65.5 117 38.5
Ciclev10018573m.g Citrus clementina HOM05D000005 ORTHO05D000012 8.8e-09 65.1 194 30.9
GSVIVG01004865001 Vitis vinifera HOM05D000005 ORTHO05D001748 8.8e-09 65.1 154 33.8
FAN01G0306 Fragaria x ananassa HOM05D000005 ORTHO05D001748 1.1e-08 64.7 178 27.0
QL09p043498 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-08 64.7 201 28.4
MD03G1202400 Malus domestica HOM05D000005 ORTHO05D001748 1.5e-08 64.3 141 33.3
QL05p000396 Quercus lobata HOM05D000005 ORTHO05D000012 1.5e-08 64.3 207 27.1
RcHm_v2.0_Chr1g0349181 Rosa chinensis HOM05D000005 ORTHO05D001748 1.5e-08 64.3 112 34.8
RcHm_v2.0_Chr6g0245481 Rosa chinensis HOM05D000005 ORTHO05D001748 1.5e-08 64.3 91 41.8
GSVIVG01026101001 Vitis vinifera HOM05D000005 ORTHO05D000012 1.5e-08 64.3 205 27.8
AL8G13700 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 2.0e-08 63.9 213 31.5
QL05p015380 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-08 63.9 237 25.3
QL09p004171 Quercus lobata HOM05D000005 ORTHO05D001748 2.0e-08 63.9 191 24.6
FvH4_1g22390 Fragaria vesca HOM05D000005 ORTHO05D000294 2.6e-08 63.5 98 39.8
QL09p048934 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-08 63.5 221 29.0
RcHm_v2.0_Chr5g0063811 Rosa chinensis HOM05D000005 ORTHO05D000012 2.6e-08 63.5 214 29.4
Cc08_g06820 Coffea canephora HOM05D000005 ORTHO05D000012 3.3e-08 63.2 214 28.5
QL05p031496 Quercus lobata HOM05D000005 ORTHO05D000012 3.3e-08 63.2 193 24.9
QL09p043628 Quercus lobata HOM05D000005 ORTHO05D000012 3.3e-08 63.2 206 28.6
Cc08_g06850 Coffea canephora HOM05D000005 ORTHO05D000012 4.4e-08 62.8 200 28.0
Manes.02G202100 Manihot esculenta HOM05D000005 ORTHO05D000012 4.4e-08 62.8 215 27.0
QL09p001553 Quercus lobata HOM05D000005 ORTHO05D000012 4.4e-08 62.8 213 29.1
Ciclev10023653m.g Citrus clementina HOM05D000005 ORTHO05D000012 5.7e-08 62.4 157 29.3
FAN19G2490 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.7e-08 62.4 98 38.8
Manes.06G002100 Manihot esculenta HOM05D000005 ORTHO05D000012 5.7e-08 62.4 205 27.8
QL05p015996 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-08 62.4 209 27.8
QL09p043790 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-08 62.4 178 28.7
RcHm_v2.0_Chr1g0335971 Rosa chinensis HOM05D000005 ORTHO05D001748 7.4e-08 62.0 148 33.1
CAN.G809.27 Capsicum annuum HOM05D000005 ORTHO05D000012 9.7e-08 61.6 186 26.3
Lj7A417T45 Lonicera japonica HOM05D000005 ORTHO05D001748 9.7e-08 61.6 147 29.3
Duzib268G0623 Durio zibethinus HOM05D000005 ORTHO05D000012 1.3e-07 61.2 199 30.7
GSVIVG01001797001 Vitis vinifera HOM05D000005 ORTHO05D000012 1.3e-07 61.2 145 29.7
Cc00_g15130 Coffea canephora HOM05D000005 ORTHO05D000012 1.7e-07 60.8 82 40.2
Cc00_g23220 Coffea canephora HOM05D000005 ORTHO05D000012 1.7e-07 60.8 88 39.8
MD10G1035400 Malus domestica HOM05D000005 ORTHO05D001748 1.7e-07 60.8 160 29.4
QL09p001663 Quercus lobata HOM05D000005 ORTHO05D000012 1.7e-07 60.8 167 26.9
RcHm_v2.0_Chr1g0334101 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-07 60.8 150 31.3
RcHm_v2.0_Chr6g0246501 Rosa chinensis HOM05D000005 ORTHO05D001748 1.7e-07 60.8 83 36.1
Cpa.g.sc27.17 Carica papaya HOM05D000005 ORTHO05D000012 2.2e-07 60.5 198 27.8
QL09p052750 Quercus lobata HOM05D000005 ORTHO05D000012 2.2e-07 60.5 217 25.3
Dinv31501 Davidia involucrata HOM05D000005 ORTHO05D000012 2.8e-07 60.1 82 45.1
FAN03G2217 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.8e-07 60.1 189 27.5
QL04p074877 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-07 60.1 165 27.9
QL09p052060 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-07 60.1 206 24.8
RcHm_v2.0_Chr6g0247331 Rosa chinensis HOM05D000005 ORTHO05D000012 2.8e-07 60.1 121 33.9
CSS0042085 Camellia sinensis var. sinensis HOM05D007066 ORTHO05D009013 3.7e-07 59.7 77 44.2
FvH4_7g17700 Fragaria vesca HOM05D000005 ORTHO05D000012 3.7e-07 59.7 110 33.6
FAN06G0883 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.7e-07 59.7 110 33.6
FAN06G1031 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.7e-07 59.7 110 33.6
QL09p051938 Quercus lobata HOM05D000005 ORTHO05D000012 3.7e-07 59.7 226 26.5
RcHm_v2.0_Chr1g0375951 Rosa chinensis HOM05D000005 ORTHO05D000012 3.7e-07 59.7 146 30.8
Prupe.6G160100 Prunus persica HOM05D000005 ORTHO05D000012 4.8e-07 59.3 198 24.2
FAN03G1863 Fragaria x ananassa HOM05D000005 ORTHO05D001748 6.3e-07 58.9 189 27.5
MD05G1125600 Malus domestica HOM05D000005 ORTHO05D011727 6.3e-07 58.9 169 30.8
MD10G1128600 Malus domestica HOM05D000005 ORTHO05D000012 6.3e-07 58.9 232 27.6
QL05p008421 Quercus lobata HOM05D000005 ORTHO05D000012 6.3e-07 58.9 217 23.0
Duzib268G1381 Durio zibethinus HOM05D000005 ORTHO05D000012 8.2e-07 58.5 197 28.4
FAN21G1473 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.2e-07 58.5 168 28.6
MD05G1019700 Malus domestica HOM05D000005 ORTHO05D000012 8.2e-07 58.5 188 25.5
QL04p027472 Quercus lobata HOM05D000005 ORTHO05D010574 8.2e-07 58.5 157 29.3
CSS0042100 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.1e-06 58.2 82 40.2
Prupe.8G027100 Prunus persica HOM05D000005 ORTHO05D000012 1.1e-06 58.2 174 32.2
QL11p046259 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-06 58.2 221 28.1
Lju110C4T1 Lonicera japonica HOM05D007424 ORTHO05D001748 1.4e-06 57.8 93 37.6
QL09p052618 Quercus lobata HOM05D000005 ORTHO05D000012 1.4e-06 57.8 200 26.0
FAN03G2447 Fragaria x ananassa HOM05D000005 ORTHO05D001748 1.8e-06 57.4 157 26.1
FAN21G3033 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.8e-06 57.4 216 26.9
QL03p065059 Quercus lobata HOM05D000005 ORTHO05D000012 1.8e-06 57.4 193 27.5
QL09p004085 Quercus lobata HOM05D000005 ORTHO05D000012 1.8e-06 57.4 194 28.9
AL7G34610 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 2.4e-06 57.0 208 26.9
BcaB07g30896 Brassica carinata HOM05D000005 ORTHO05D000012 2.4e-06 57.0 235 27.2
QL09p004209 Quercus lobata HOM05D000005 ORTHO05D000012 2.4e-06 57.0 208 27.4
QL09p004306 Quercus lobata HOM05D000005 ORTHO05D000012 2.4e-06 57.0 201 29.4
HanXRQChr04g0101181 Helianthus annuus HOM05D000005 ORTHO05D000012 3.1e-06 56.6 87 37.9
FvH4_7g28550 Fragaria vesca HOM05D000005 ORTHO05D000012 4.1e-06 56.2 144 30.6
FAN03G0099 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.1e-06 56.2 144 30.6
FAN03G3405 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.1e-06 56.2 144 30.6
FAN06G4475 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.1e-06 56.2 144 30.6
FAN10G3442 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.1e-06 56.2 144 30.6
QL04p087751 Quercus lobata HOM05D000005 ORTHO05D000012 4.1e-06 56.2 210 27.1
QL09p052702 Quercus lobata HOM05D000005 ORTHO05D000012 4.1e-06 56.2 201 26.4
CSS0009559 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.3e-06 55.8 100 35.0
Duzib268G0652 Durio zibethinus HOM05D000005 ORTHO05D000012 5.3e-06 55.8 225 28.4
MD10G1020900 Malus domestica HOM05D000005 ORTHO05D000012 5.3e-06 55.8 154 29.9
QL09p006806 Quercus lobata HOM05D000005 ORTHO05D000012 5.3e-06 55.8 99 37.4
Lju279C4T4 Lonicera japonica HOM05D007424 ORTHO05D001748 7.0e-06 55.5 86 37.2
MD05G1018900 Malus domestica HOM05D000005 ORTHO05D000012 7.0e-06 55.5 150 28.7
MD10G1034700 Malus domestica HOM05D000005 ORTHO05D001748 7.0e-06 55.5 159 30.8
FvH4_2g00950 Fragaria vesca HOM05D000005 ORTHO05D001748 9.1e-06 55.1 84 36.9
Potri.013G098550 Populus trichocarpa HOM05D000005 ORTHO05D000012 9.1e-06 55.1 179 28.5
QL09p000413 Quercus lobata HOM05D000005 ORTHO05D001748 9.1e-06 55.1 158 27.8


User provided reference genes

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