Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22114 Davidia involucrata HOM05D001705 ORTHO05D008928 7.2e-53 210.3 106 100.0
Dinv37409 Davidia involucrata HOM05D001705 ORTHO05D008928 2.5e-45 185.3 106 86.8
TAR628G0577 Trochodendron aralioides HOM05D001705 ORTHO05D008928 1.7e-41 172.6 106 83.0
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.5e-39 164.9 107 79.4
Actinidia29374 Actinidia chinensis HOM05D001705 ORTHO05D008928 7.8e-39 163.7 106 79.2
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.3e-38 162.9 107 78.5
GSVIVG01036284001 Vitis vinifera HOM05D001705 ORTHO05D008928 2.9e-38 161.8 107 77.6
Rhsim12G0002800 Rhododendron simsii HOM05D001705 ORTHO05D008928 8.6e-38 160.2 107 79.4
vmacro00942 Vaccinium macrocarpon HOM05D001705 ORTHO05D008928 3.3e-37 158.3 106 77.4
TAR376G0455 Trochodendron aralioides HOM05D001705 ORTHO05D008928 4.3e-37 157.9 106 77.4
Hma1.2p1_0238F.1_g099670 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 6.1e-36 154.1 97 77.3
Ciclev10022992m.g Citrus clementina HOM05D001705 ORTHO05D008928 8.0e-36 153.7 106 72.6
Hma1.2p1_2213F.1_g317220 Hydrangea macrophylla HOM05D001705 ORTHO05D008928 2.3e-35 152.1 96 76.0
Atru.chr3.1320 Acer truncatum HOM05D001705 ORTHO05D008928 6.8e-35 150.6 106 70.8
Haze_13961 Corylus avellana HOM05D001705 ORTHO05D008953 6.8e-35 150.6 97 74.2
CiPaw.03G013900 Carya illinoinensis HOM05D001705 ORTHO05D008928 1.2e-34 149.8 106 70.8
Cfa008073 Carpinus fangiana HOM05D001705 ORTHO05D008928 1.5e-34 149.4 98 74.5
DCAR_003512 Daucus carota HOM05D001705 ORTHO05D008928 3.4e-34 148.3 106 70.8
Prupe.8G006600 Prunus persica HOM05D001705 ORTHO05D008928 4.4e-34 147.9 106 69.8
FvH4_2g00750 Fragaria vesca HOM05D001705 ORTHO05D008928 5.7e-34 147.5 106 71.7
FAN24G2035 Fragaria x ananassa HOM05D001705 ORTHO05D008928 5.7e-34 147.5 106 71.7
FAN27G0168 Fragaria x ananassa HOM05D001705 ORTHO05D008928 5.7e-34 147.5 106 71.7
QL07p031108 Quercus lobata HOM05D001705 ORTHO05D008928 5.7e-34 147.5 105 69.5
EL10Ac8g18938 Beta vulgaris HOM05D001705 ORTHO05D008928 9.8e-34 146.7 99 71.7
Nn6g34378 Nelumbo nucifera HOM05D001705 ORTHO05D008928 1.7e-33 146.0 106 69.8
Nitab4.5_0003432g0050 Nicotiana tabacum HOM05D001705 ORTHO05D008928 2.9e-33 145.2 106 67.0
Glyma.06G321300 Glycine max HOM05D001705 ORTHO05D008928 4.9e-33 144.4 89 78.7
QL07p047839 Quercus lobata HOM05D001705 ORTHO05D008928 4.9e-33 144.4 105 67.6
RcHm_v2.0_Chr6g0251131 Rosa chinensis HOM05D001705 ORTHO05D008928 4.9e-33 144.4 106 69.8
MBI06_g14319_MAGBIO Magnolia biondii HOM05D001705 ORTHO05D008928 6.4e-33 144.1 98 75.5
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 6.4e-33 144.1 97 72.2
Nitab4.5_0007940g0020 Nicotiana tabacum HOM05D001705 ORTHO05D008928 1.1e-32 143.3 106 65.1
CAN.G836.15 Capsicum annuum HOM05D001705 ORTHO05D008928 1.4e-32 142.9 103 67.0
AUR62025342 Chenopodium quinoa HOM05D001705 ORTHO05D008928 1.4e-32 142.9 100 68.0
AUR62028345 Chenopodium quinoa HOM05D001705 ORTHO05D008928 1.4e-32 142.9 100 68.0
MD05G1003200 Malus domestica HOM05D001705 ORTHO05D008928 1.4e-32 142.9 106 70.8
Phvul.L001622 Phaseolus vulgaris HOM05D001705 ORTHO05D008928 1.4e-32 142.9 100 72.0
CiPaw.10G112700 Carya illinoinensis HOM05D001705 ORTHO05D008928 2.4e-32 142.1 106 67.0
HanXRQChr01g0026311 Helianthus annuus HOM05D001705 ORTHO05D008928 2.4e-32 142.1 87 78.2
VMungo1080G1609 Vigna mungo HOM05D001705 ORTHO05D008928 2.4e-32 142.1 100 72.0
TWI81G0898 Tripterygium wilfordii HOM05D001705 ORTHO05D008928 4.1e-32 141.4 97 72.2
Ah.13g075530 Amaranthus hybridus HOM05D001705 ORTHO05D008928 5.4e-32 141.0 98 69.4
Duzib106G1039 Durio zibethinus HOM05D001705 ORTHO05D008928 9.2e-32 140.2 89 76.4
Potri.019G070801 Populus trichocarpa HOM05D001705 ORTHO05D008928 9.2e-32 140.2 100 70.0
Sabra19G0082700 Salix brachista HOM05D001705 ORTHO05D008928 9.2e-32 140.2 100 70.0
Aqoxy1G00582 Aquilegia oxysepala HOM05D001705 ORTHO05D008928 1.2e-31 139.8 100 69.0
Manes.03G079500 Manihot esculenta HOM05D001705 ORTHO05D008928 1.2e-31 139.8 106 64.2
MD10G1004200 Malus domestica HOM05D001705 ORTHO05D008928 1.6e-31 139.4 106 69.8
Peaxi162Scf00078g00076 Petunia axillaris HOM05D001705 ORTHO05D008928 2.7e-31 138.7 106 63.2
PGSC0003DMG400010036 Solanum tuberosum HOM05D001705 ORTHO05D008928 2.7e-31 138.7 103 66.0
CANSAT21G1408 Cannabis sativa HOM05D001705 ORTHO05D008928 5.9e-31 137.5 100 66.0
CANSAT21G2117 Cannabis sativa HOM05D001705 ORTHO05D008928 5.9e-31 137.5 100 66.0
Migut.C01384 Erythranthe guttata HOM05D001705 ORTHO05D008928 5.9e-31 137.5 89 75.3
Lalb_Chr15g0079721 Lupinus albus HOM05D001705 ORTHO05D008928 5.9e-31 137.5 90 73.3
Medtr3g008540 Medicago truncatula HOM05D001705 ORTHO05D008928 5.9e-31 137.5 90 73.3
Gohir.A06G168000 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.3e-30 136.3 86 75.6
Gohir.D06G175400 Gossypium hirsutum HOM05D001705 ORTHO05D008928 1.3e-30 136.3 86 75.6
Gorai.010G205800 Gossypium raimondii HOM05D001705 ORTHO05D008928 1.3e-30 136.3 86 75.6
Lj3g0021440 Lotus japonicus HOM05D001705 ORTHO05D008928 1.3e-30 136.3 88 75.0
SalBow7G0612 Salvia bowleyana HOM05D001705 ORTHO05D008928 1.3e-30 136.3 107 66.4
Eucgr.F02944 Eucalyptus grandis HOM05D001705 ORTHO05D008928 1.7e-30 136.0 106 65.1
Psat5g227400 Pisum sativum HOM05D001705 ORTHO05D008928 3.9e-30 134.8 88 72.7
Sopen02g034700 Solanum pennellii HOM05D001705 ORTHO05D008928 3.9e-30 134.8 87 74.7
Cpa.g.sc21.88 Carica papaya HOM05D001705 ORTHO05D008928 5.0e-30 134.4 105 64.8
Lj3g0024983 Lotus japonicus HOM05D001705 ORTHO05D008928 1.1e-29 133.3 87 73.6
PGR044G0661 Punica granatum HOM05D001705 ORTHO05D008928 1.1e-29 133.3 86 77.9
MSTRG.5080 Avicennia marina HOM05D001705 ORTHO05D008928 1.5e-29 132.9 105 64.8
ECA248G1877 Erigeron canadensis HOM05D001705 ORTHO05D008928 1.5e-29 132.9 91 71.4
arahy.Tifrunner.gnm1.ann1.X4BGNP Arachis hypogaea HOM05D001705 ORTHO05D008928 3.3e-29 131.7 99 68.7
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 4.3e-29 131.3 97 64.9
Sc18g0002990 Simmondsia chinensis HOM05D001705 ORTHO05D008928 7.3e-29 130.6 100 65.0
Lsat_1_v5_gn_1_56320 Lactuca sativa HOM05D001705 ORTHO05D008928 9.5e-29 130.2 83 74.7
CDE11G0405 Ceratophyllum demersum HOM05D001705 ORTHO05D008928 1.2e-28 129.8 100 66.0
ClCG08G000770 Citrullus lanatus HOM05D001705 ORTHO05D008928 2.8e-28 128.6 82 74.4
unitig_8.g4896 Utricularia gibba HOM05D001705 ORTHO05D008928 4.7e-28 127.9 89 67.4
Sed0017068 Sechium edule HOM05D001705 ORTHO05D008928 8.0e-28 127.1 82 73.2
Thhalv10029346m.g Eutrema salsugineum HOM05D001705 ORTHO05D008928 1.4e-27 126.3 89 67.4
PSO339G0564 Papaver somniferum HOM05D001705 ORTHO05D008928 3.1e-27 125.2 91 70.3
THA.LOC104815816 Tarenaya hassleriana HOM05D001705 ORTHO05D008928 4.0e-27 124.8 85 65.9
MELO3C022174.2 Cucumis melo HOM05D001705 ORTHO05D008928 5.2e-27 124.4 96 66.7
AT4G10100 Arabidopsis thaliana HOM05D001705 ORTHO05D008928 6.8e-27 124.0 89 66.3
BcaB04g18852 Brassica carinata HOM05D001705 ORTHO05D008928 1.2e-26 123.2 107 60.7
BcaB05g23921 Brassica carinata HOM05D001705 ORTHO05D008928 1.5e-26 122.9 106 60.4
Carub.0006s2867 Capsella rubella HOM05D001705 ORTHO05D008928 2.6e-26 122.1 83 71.1
Aa31LG9G11900 Aethionema arabicum HOM05D001705 ORTHO05D008928 3.4e-26 121.7 106 59.4
CsaV3_5G039950 Cucumis sativus L. HOM05D001705 ORTHO05D008928 3.4e-26 121.7 95 65.3
Sp6g07460 Schrenkiella parvula HOM05D001705 ORTHO05D008928 3.4e-26 121.7 100 60.0
BcaB01g01450 Brassica carinata HOM05D001705 ORTHO05D008928 4.4e-26 121.3 106 58.5
BcaC04g21016 Brassica carinata HOM05D001705 ORTHO05D008928 7.5e-26 120.6 106 57.5
A09p28840 Brassica napus HOM05D001705 ORTHO05D008928 7.5e-26 120.6 106 57.5
C09p36640 Brassica napus HOM05D001705 ORTHO05D008928 7.5e-26 120.6 106 57.5
BolC9t56496H Brassica oleracea HOM05D001705 ORTHO05D008928 7.5e-26 120.6 106 57.5
BraA09t38446Z Brassica rapa HOM05D001705 ORTHO05D008928 7.5e-26 120.6 106 57.5
AL6G43910 Arabidopsis lyrata HOM05D001705 ORTHO05D008928 9.8e-26 120.2 96 61.5
CARHR261140 Cardamine hirsuta HOM05D001705 ORTHO05D008928 4.9e-25 117.9 97 60.8
VMungo0464G0569 Vigna mungo HOM05D001705 ORTHO05D008928 4.9e-25 117.9 86 68.6
ATR0757G218 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.1e-24 116.7 104 56.7
Os02g0558300 Oryza sativa ssp. japonica HOM05D001705 ORTHO05D008928 1.1e-24 116.7 77 75.3
Zm00001eb244080 Zea mays HOM05D001705 ORTHO05D008928 5.4e-24 114.4 92 60.9
Zm00001eb182270 Zea mays HOM05D001705 ORTHO05D008928 2.7e-23 112.1 80 67.5
HPP92_013556 Vanilla planifolia HOM05D001705 ORTHO05D008928 2.3e-22 109.0 90 58.9
SEGI_06051 Sequoiadendron giganteum HOM05D001705 ORTHO05D008928 3.9e-22 108.2 88 58.0
ATR1089G014 Amborella trichopoda HOM05D001705 ORTHO05D008928 1.2e-20 103.2 83 60.2
Solyc02g090010.3 Solanum lycopersicum HOM05D001705 ORTHO05D008928 1.2e-20 103.2 63 79.4
SMO178G0001 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 6.8e-19 97.4 86 50.0
SMO119G0349 Selaginella moellendorffii HOM05D001705 ORTHO05D008928 1.5e-18 96.3 86 48.8
Pp3c24_14090 Physcomitrium patens HOM05D001705 ORTHO05D008928 5.4e-16 87.8 81 46.9
Mapoly0053s0105 Marchantia polymorpha HOM05D001705 ORTHO05D008928 1.2e-15 86.7 106 43.4
SHI16716 Sapria himalayana HOM05D001705 ORTHO05D008928 1.2e-15 86.7 90 46.7
BolC2t10291H Brassica oleracea HOM05D001705 ORTHO05D008928 5.1e-14 81.3 68 57.4
Cre08.g382545 Chlamydomonas reinhardtii HOM05D001705 ORTHO05D008928 4.0e-11 71.6 84 39.3
CBR_g41370 Chara braunii HOM05D001705 ORTHO05D008928 1.2e-10 70.1 82 39.0
MCO06G125 Micromonas commoda HOM05D001705 ORTHO05D008928 9.9e-10 67.0 84 44.0
CBR_g5690 Chara braunii HOM05D001705 ORTHO05D008928 5.4e-08 61.2 80 37.5
PRCOL_00000441 Prasinoderma coloniale HOM05D000415 ORTHO05D002017 1.0e-06 57.0 92 38.0


User provided reference genes

Program Settings