Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 6.7e-210 733.8 376 100.0
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 1.8e-130 469.9 352 68.2
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 2.3e-130 469.5 354 68.9
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 5.2e-130 468.4 346 73.1
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 3.3e-124 449.1 353 66.0
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 1.6e-123 446.8 353 65.4
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 3.5e-118 429.1 355 64.2
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.7e-117 426.8 354 62.7
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 3.3e-116 422.5 352 65.1
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 7.3e-116 421.4 349 64.8
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 8.1e-115 417.9 348 64.7
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.8e-114 416.8 365 63.8
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.4e-114 416.4 371 59.6
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.4e-114 416.4 371 59.6
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 5.2e-114 415.2 354 63.6
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 8.9e-114 414.5 334 62.9
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.5e-113 413.7 353 59.5
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 2.0e-113 413.3 340 62.6
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 9.9e-113 411.0 360 63.3
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.7e-112 410.2 354 61.9
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 2.9e-112 409.5 343 63.6
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 6.4e-112 408.3 345 65.5
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.1e-111 407.5 327 62.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.1e-111 407.5 327 62.1
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 3.2e-111 406.0 360 60.3
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.3e-109 400.6 335 64.2
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.7e-109 400.2 356 63.2
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 2.3e-109 399.8 358 60.3
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 3.0e-109 399.4 339 61.7
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 3.9e-109 399.1 327 63.0
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 5.1e-109 398.7 349 59.3
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 5.1e-109 398.7 339 60.8
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 5.1e-109 398.7 380 57.6
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.3e-108 395.6 340 61.5
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 5.6e-108 395.2 339 61.1
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 1.3e-107 394.0 350 61.7
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 2.1e-107 393.3 345 61.2
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.2e-107 391.7 354 58.2
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.2e-107 391.7 354 58.2
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.2e-107 391.7 354 58.2
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 6.2e-107 391.7 354 58.2
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 6.2e-107 391.7 350 62.0
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 8.1e-107 391.3 336 61.3
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 3.1e-106 389.4 336 62.2
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 4.0e-106 389.0 346 59.2
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 4.0e-106 389.0 349 61.0
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 4.0e-106 389.0 336 64.3
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 5.3e-106 388.7 346 59.8
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 1.2e-105 387.5 342 58.5
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 3.4e-105 386.0 368 56.8
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 4.4e-105 385.6 328 63.7
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 9.9e-105 384.4 351 58.4
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 1.3e-104 384.0 348 57.8
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.3e-104 384.0 355 57.2
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 2.9e-104 382.9 345 59.4
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 3.8e-104 382.5 328 63.4
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 6.4e-104 381.7 337 58.5
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 1.4e-103 380.6 354 58.5
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 1.9e-103 380.2 353 57.2
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.4e-103 379.8 324 62.7
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 3.2e-103 379.4 347 59.1
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 4.2e-103 379.0 337 59.6
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 7.1e-103 378.3 343 60.6
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 9.3e-103 377.9 337 57.9
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 4.6e-102 375.6 350 58.3
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 6.0e-102 375.2 336 61.3
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 7.9e-102 374.8 345 57.1
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.3e-101 374.0 337 60.2
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 1.7e-101 373.6 338 58.0
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 2.3e-101 373.2 346 59.2
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 2.3e-101 373.2 309 63.4
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 2.3e-101 373.2 337 58.5
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 3.0e-101 372.9 357 57.4
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 8.7e-101 371.3 358 57.5
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 8.7e-101 371.3 352 58.8
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.1e-100 370.9 350 57.7
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 1.9e-100 370.2 333 59.5
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 2.5e-100 369.8 352 58.8
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 9.6e-100 367.9 340 57.6
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 9.6e-100 367.9 350 57.4
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 9.6e-100 367.9 353 57.5
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 1.3e-99 367.5 348 55.7
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 2.1e-99 366.7 336 57.4
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 2.8e-99 366.3 354 57.3
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 3.4e-97 359.4 346 56.6
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 8.4e-96 354.8 357 55.7
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 1.4e-95 354.0 336 56.2
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 4.2e-95 352.4 357 55.5
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 7.1e-95 351.7 273 65.9
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 2.1e-94 350.1 333 58.9
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.0e-93 347.8 349 52.1
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 2.5e-92 343.2 273 63.4
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 5.6e-92 342.0 329 58.1
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.0e-88 331.3 326 55.2
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 6.5e-88 328.6 348 53.2
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.6e-86 323.9 353 50.1
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 6.3e-83 312.0 191 78.5
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 1.1e-74 284.6 330 48.5
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 2.9e-72 276.6 329 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 5.7e-68 262.3 334 44.6
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 2.8e-67 260.0 203 60.6
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 1.5e-65 254.2 333 42.6
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 2.0e-65 253.8 172 69.8
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 2.0e-65 253.8 307 48.9
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 2.5e-63 246.9 343 42.6
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 3.2e-63 246.5 339 40.7
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.1e-58 231.5 246 52.8
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.6e-57 227.6 203 56.2
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 2.0e-57 227.3 347 42.7
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 6.5e-56 222.2 365 37.0
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.0e-53 214.9 131 76.3
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 7.7e-49 198.7 330 42.1
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 8.5e-48 195.3 350 35.1
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 1.5e-47 194.5 130 69.2
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.5e-47 194.5 354 37.9
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 2.3e-45 187.2 320 40.0
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 9.8e-44 181.8 259 45.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.8e-42 177.6 327 40.4
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.0e-37 161.8 206 46.1
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 7.0e-34 149.1 138 59.4
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.3e-32 144.8 330 32.4
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 8.0e-30 135.6 153 54.2
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 8.9e-29 132.1 450 25.8
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.2e-27 127.5 86 69.8
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.1e-26 125.2 103 65.0
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.7e-24 117.9 144 47.9
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.8e-22 110.5 70 68.6
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 1.8e-21 107.8 77 67.5
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 1.5e-15 88.2 60 66.7
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 4.0e-13 80.1 132 31.1
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 5.2e-13 79.7 101 43.6
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 7.5e-12 75.9 156 41.0
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.0e-08 65.5 58 56.9


User provided reference genes

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