Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 3.9e-111 404.8 206 100.0
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.5e-99 364.8 200 90.0
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 5.8e-99 364.4 198 91.4
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 4.9e-98 361.3 201 89.6
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 6.4e-98 360.9 200 89.0
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 6.0e-96 354.4 201 88.6
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 6.0e-96 354.4 201 86.6
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 7.9e-96 354.0 190 91.6
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 7.9e-96 354.0 201 85.6
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 1.0e-95 353.6 201 85.6
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 2.3e-95 352.4 201 86.1
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.5e-94 349.7 190 90.0
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.9e-94 349.4 201 85.6
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 3.3e-94 348.6 201 85.6
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 3.3e-94 348.6 191 90.6
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 3.3e-94 348.6 193 87.0
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 4.3e-94 348.2 193 87.0
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 5.6e-94 347.8 191 89.0
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 5.6e-94 347.8 199 84.9
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 7.4e-94 347.4 200 84.0
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 2.1e-93 345.9 201 84.6
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 2.1e-93 345.9 191 86.9
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 2.8e-93 345.5 201 83.6
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 3.7e-93 345.1 201 83.6
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 4.8e-93 344.7 201 84.6
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 8.1e-93 344.0 196 85.7
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.1e-92 343.6 194 87.1
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.8e-92 342.8 200 83.5
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.1e-92 342.0 190 89.5
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 3.1e-92 342.0 197 85.3
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 5.3e-92 341.3 201 83.1
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 6.9e-92 340.9 200 83.5
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 9.0e-92 340.5 194 84.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 9.0e-92 340.5 194 84.5
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 9.0e-92 340.5 193 86.0
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.2e-91 340.1 201 82.6
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.5e-91 339.7 201 82.6
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.5e-91 339.7 201 82.1
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 2.0e-91 339.3 201 82.1
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 3.4e-91 338.6 189 86.2
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.8e-91 337.8 197 83.2
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 5.8e-91 337.8 197 84.3
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 7.6e-91 337.4 201 81.6
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 7.6e-91 337.4 198 82.8
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 9.9e-91 337.0 198 82.8
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 9.9e-91 337.0 201 81.6
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 1.3e-90 336.7 199 81.9
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 1.3e-90 336.7 199 81.9
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 1.3e-90 336.7 199 81.9
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.3e-90 336.7 189 85.7
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.3e-90 336.7 199 81.9
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.7e-90 336.3 199 82.9
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.7e-90 336.3 200 83.0
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.2e-90 335.9 192 85.4
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 2.2e-90 335.9 194 85.6
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.2e-90 335.9 189 86.2
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 2.9e-90 335.5 196 83.7
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 3.8e-90 335.1 194 84.0
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 6.4e-90 334.3 194 83.5
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 8.4e-90 334.0 191 84.3
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.1e-89 333.6 195 82.6
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 1.1e-89 333.6 191 83.8
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-89 333.2 192 84.9
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 1.4e-89 333.2 192 84.9
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.9e-89 332.8 189 85.2
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.9e-89 332.8 189 84.1
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.9e-89 332.8 193 84.5
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 2.4e-89 332.4 189 85.2
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 4.2e-89 331.6 200 82.0
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 5.5e-89 331.3 179 91.6
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 7.1e-89 330.9 196 81.1
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.2e-88 330.1 189 83.1
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.6e-88 329.7 189 83.6
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.6e-88 329.7 199 80.4
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.6e-88 329.7 199 80.4
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.6e-88 329.7 189 84.1
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.1e-88 329.3 197 82.7
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 2.1e-88 329.3 189 84.7
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 2.1e-88 329.3 200 79.5
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 3.5e-88 328.6 194 82.5
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.5e-88 328.6 194 81.4
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 4.6e-88 328.2 196 81.6
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 7.9e-88 327.4 197 80.7
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 7.9e-88 327.4 197 80.2
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.3e-87 326.6 200 79.5
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.8e-87 326.2 194 82.0
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.8e-87 326.2 201 79.6
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 3.0e-87 325.5 189 82.0
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 3.9e-87 325.1 193 81.9
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.9e-87 325.1 193 81.9
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 1.5e-86 323.2 194 78.9
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.5e-86 322.4 193 80.8
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.3e-86 322.0 187 80.7
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 3.3e-86 322.0 213 76.5
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 3.3e-86 322.0 213 76.5
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 4.3e-86 321.6 201 79.1
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 5.6e-86 321.2 193 79.3
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 5.6e-86 321.2 193 79.3
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 9.6e-86 320.5 194 80.4
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.3e-85 320.1 201 79.6
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 4.8e-85 318.2 200 77.5
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.1e-84 317.0 189 79.9
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.4e-84 316.6 187 79.7
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.4e-84 315.8 201 76.6
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 5.3e-84 314.7 189 78.8
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 9.0e-84 313.9 194 76.8
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 5.8e-83 311.2 177 85.9
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.0e-82 310.5 194 76.3
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.3e-82 310.1 201 75.6
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.7e-80 302.4 179 82.7
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.4e-76 290.0 159 89.9
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 4.1e-76 288.5 189 73.5
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 5.3e-76 288.1 200 70.0
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.7e-74 283.1 201 73.1
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.4e-73 280.0 195 67.7
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.5e-73 279.3 200 67.0
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 6.1e-72 274.6 192 72.9
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.9e-70 269.6 169 79.3
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 4.1e-68 261.9 203 64.0
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.2e-67 260.4 204 63.2
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.7e-66 256.5 140 87.9
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.7e-66 256.5 155 80.0
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 5.0e-66 255.0 189 65.6
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.8e-63 246.5 133 91.7
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 7.4e-62 241.1 153 76.5
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.8e-60 236.5 130 88.5
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.2e-57 225.7 139 77.0
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 7.5e-46 188.0 200 47.5
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 2.8e-45 186.0 112 79.5
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.8e-45 186.0 200 47.0
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 3.7e-45 185.7 112 79.5
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 8.2e-45 184.5 112 77.7
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 1.8e-44 183.3 112 78.6
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 1.8e-44 183.3 112 78.6
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 4.1e-44 182.2 112 76.8
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 5.3e-44 181.8 112 77.7
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 5.3e-44 181.8 112 77.7
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 4.5e-43 178.7 112 75.9
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 2.3e-39 166.4 102 76.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 2.3e-39 166.4 102 76.5
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 4.0e-39 165.6 121 71.1
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 7.5e-38 161.4 243 38.3
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 1.1e-36 157.5 91 82.4
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.4e-36 157.1 204 41.2
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 2.9e-34 149.4 201 45.8
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 3.6e-32 142.5 201 44.8
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 6.8e-31 138.3 192 44.8
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 6.8e-31 138.3 84 79.8
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 6.8e-31 138.3 84 79.8
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 6.8e-31 138.3 84 79.8
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 1.2e-30 137.5 110 63.6
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 2.0e-30 136.7 194 44.3
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.6e-30 136.3 128 58.6
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.7e-21 107.1 63 77.8
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 2.4e-20 103.2 63 77.8
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 2.4e-20 103.2 194 32.0
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 9.2e-20 101.3 65 67.7
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 1.2e-16 90.9 60 71.7
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 4.9e-13 79.0 43 86.0
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 4.9e-13 79.0 44 84.1
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 1.1e-12 77.8 45 82.2
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.1e-12 77.8 43 86.0
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.1e-12 77.8 43 86.0
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-12 77.4 68 58.8
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 7.0e-12 75.1 43 81.4
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.6e-11 73.9 48 75.0
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.0e-11 73.6 41 85.4
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 1.5e-06 57.4 42 66.7


User provided reference genes

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