Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 7.6e-109 397.1 194 100.0
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 1.5e-67 260.0 184 71.2
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 2.5e-59 232.6 179 68.2
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 2.6e-56 222.6 194 59.8
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 3.1e-54 215.7 192 59.9
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 1.9e-51 206.5 195 56.9
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 3.3e-51 205.7 182 58.2
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 7.3e-51 204.5 174 60.3
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 1.0e-49 200.7 176 62.5
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 1.5e-48 196.8 171 58.5
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 3.4e-48 195.7 185 55.7
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 3.4e-48 195.7 160 63.8
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 9.8e-48 194.1 207 54.6
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 1.3e-47 193.7 161 59.6
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 1.7e-47 193.4 196 54.6
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 6.4e-47 191.4 188 54.8
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 4.1e-46 188.7 194 52.6
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 2.7e-45 186.0 183 54.6
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 8.6e-44 181.0 186 54.8
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 2.5e-43 179.5 185 55.1
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 2.5e-43 179.5 153 60.1
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 4.3e-43 178.7 186 52.2
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 7.3e-43 177.9 184 54.3
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 1.2e-42 177.2 171 55.0
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 4.0e-41 172.2 169 55.6
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 2.6e-40 169.5 189 52.4
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 1.7e-39 166.8 184 50.5
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 4.9e-39 165.2 134 64.2
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 3.2e-38 162.5 162 55.6
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 1.2e-37 160.6 178 49.4
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 4.6e-37 158.7 147 55.8
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 6.0e-37 158.3 147 55.8
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 3.0e-36 156.0 147 55.1
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 3.9e-36 155.6 196 46.4
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 3.9e-36 155.6 185 48.6
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 5.0e-36 155.2 186 50.5
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 1.1e-35 154.1 194 45.9
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 4.3e-35 152.1 155 53.5
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.8e-33 146.7 192 41.7
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 2.0e-32 143.3 177 48.0
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 2.6e-32 142.9 164 51.2
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 2.6e-32 142.9 175 48.6
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 3.4e-32 142.5 154 48.7
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 5.8e-32 141.7 189 42.9
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 5.8e-32 141.7 154 48.7
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 7.5e-32 141.4 154 48.1
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 7.5e-32 141.4 183 43.7
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 9.8e-32 141.0 156 51.3
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 1.3e-31 140.6 158 48.7
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 3.7e-31 139.0 179 43.6
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 1.1e-30 137.5 189 43.4
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 4.1e-30 135.6 177 43.5
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 4.1e-30 135.6 221 38.9
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 9.2e-30 134.4 179 45.3
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 1.2e-29 134.0 222 40.1
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 1.6e-29 133.7 182 43.4
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 1.6e-29 133.7 156 50.0
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 4.6e-29 132.1 166 44.6
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 7.8e-29 131.3 203 43.3
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.7e-28 130.2 187 41.2
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.7e-28 130.2 145 49.0
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 5.6e-27 125.2 167 43.1
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 2.8e-26 122.9 173 41.6
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 1.5e-24 117.1 172 42.4
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 3.4e-24 115.9 143 44.1
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 1.3e-23 114.0 125 46.4
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 2.2e-23 113.2 124 50.0
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 2.9e-23 112.8 171 38.6
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 2.9e-23 112.8 115 51.3
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 2.9e-23 112.8 82 65.9
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 4.9e-23 112.1 172 41.9
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 4.9e-23 112.1 156 46.2
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 2.4e-22 109.8 139 43.2
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 3.2e-22 109.4 85 62.4
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 6.0e-21 105.1 161 40.4
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 1.3e-20 104.0 84 59.5
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 5.1e-20 102.1 150 42.7
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 3.6e-18 95.9 170 37.1
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 6.2e-18 95.1 79 59.5
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 1.3e-15 87.4 97 44.3
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 2.2e-15 86.7 200 32.0
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.2e-14 82.8 60 70.0
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 1.6e-13 80.5 95 44.2
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 4.6e-13 79.0 183 32.2
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 8.7e-12 74.7 165 31.5
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 1.5e-11 73.9 188 30.9
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.5e-11 73.2 133 33.1
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 2.5e-11 73.2 169 32.0
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 3.3e-11 72.8 193 31.1
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 4.3e-11 72.4 162 32.1
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 5.6e-11 72.0 192 31.8
MBI03_g40382_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 7.3e-11 71.6 72 47.2
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 1.3e-10 70.9 169 32.5
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 1.3e-10 70.9 190 31.1
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 1.3e-10 70.9 162 32.1
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 2.1e-10 70.1 160 32.5
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 2.1e-10 70.1 180 30.0
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 2.8e-10 69.7 162 31.5
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 2.8e-10 69.7 161 31.1
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 4.8e-10 68.9 203 31.0
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 6.2e-10 68.6 160 31.9
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 1.4e-09 67.4 168 30.4
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 2.4e-09 66.6 180 31.1
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 3.1e-09 66.2 172 29.1
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 3.1e-09 66.2 188 27.7
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 5.3e-09 65.5 161 29.2
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 5.3e-09 65.5 176 29.5
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 6.9e-09 65.1 193 28.0
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 6.9e-09 65.1 173 31.2
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 9.0e-09 64.7 175 28.6
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 9.0e-09 64.7 181 28.7
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 9.0e-09 64.7 174 29.3
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 1.5e-08 63.9 168 28.6
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.5e-08 63.9 177 28.2
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 1.5e-08 63.9 169 29.0
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 2.0e-08 63.5 146 30.1
Peaxi162Scf00329g00121 Petunia axillaris HOM05D000727 ORTHO05D000541 2.0e-08 63.5 135 32.6
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 2.6e-08 63.2 187 28.9
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 2.6e-08 63.2 195 27.2
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 2.6e-08 63.2 195 29.2
Glyma.10G288300 Glycine max HOM05D000727 ORTHO05D000541 2.6e-08 63.2 189 29.6
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 4.5e-08 62.4 147 29.9
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 4.5e-08 62.4 192 30.7
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 5.8e-08 62.0 165 29.7
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 5.8e-08 62.0 211 27.0
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 5.8e-08 62.0 161 28.0
Nn5g26912 Nelumbo nucifera HOM05D007902 ORTHO05D009839 5.8e-08 62.0 106 34.0
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 5.8e-08 62.0 211 28.9
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 7.6e-08 61.6 177 27.1
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 9.9e-08 61.2 173 27.2
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 9.9e-08 61.2 171 27.5
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 9.9e-08 61.2 171 27.5
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 9.9e-08 61.2 168 28.0
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 9.9e-08 61.2 169 27.8
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 9.9e-08 61.2 164 29.9
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 9.9e-08 61.2 173 28.3
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 1.3e-07 60.8 169 27.8
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 1.3e-07 60.8 155 27.7
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 1.3e-07 60.8 182 29.1
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 1.7e-07 60.5 185 28.1
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 1.7e-07 60.5 213 26.8
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 1.7e-07 60.5 168 27.4
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 2.2e-07 60.1 187 27.3
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 2.2e-07 60.1 200 27.5
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 2.9e-07 59.7 185 28.6
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 2.9e-07 59.7 49 57.1
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 2.9e-07 59.7 197 26.9
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 2.9e-07 59.7 164 27.4
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 3.8e-07 59.3 156 27.6
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 3.8e-07 59.3 156 27.6
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 3.8e-07 59.3 159 28.9
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 4.9e-07 58.9 180 27.2
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 4.9e-07 58.9 163 28.8
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 4.9e-07 58.9 230 25.2
FAN07G1889 Fragaria x ananassa HOM05D000727 ORTHO05D000541 4.9e-07 58.9 171 27.5
FAN17G1781 Fragaria x ananassa HOM05D000727 ORTHO05D000541 4.9e-07 58.9 171 26.9
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 4.9e-07 58.9 188 27.1
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 4.9e-07 58.9 157 27.4
arahy.Tifrunner.gnm1.ann1.BLWT23 Arachis hypogaea HOM05D000727 ORTHO05D000541 6.4e-07 58.5 167 28.1
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 6.4e-07 58.5 217 25.8
Sabra07G0000800 Salix brachista HOM05D000727 ORTHO05D000541 6.4e-07 58.5 164 29.9
unitig_699.g19642 Utricularia gibba HOM05D001166 ORTHO05D000992 8.4e-07 58.2 129 30.2
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 1.1e-06 57.8 184 27.2
Pp3c17_7580 Physcomitrium patens HOM05D000727 ORTHO05D000541 1.4e-06 57.4 167 28.7
Lj5g0017221 Lotus japonicus HOM05D000727 ORTHO05D000541 1.9e-06 57.0 185 27.6
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 1.9e-06 57.0 172 27.9
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 2.4e-06 56.6 178 27.0
Medtr1g115220 Medicago truncatula HOM05D000727 ORTHO05D000541 2.4e-06 56.6 184 26.6
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 3.2e-06 56.2 178 27.0
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 3.2e-06 56.2 187 25.7
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 4.2e-06 55.8 175 26.3
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 4.2e-06 55.8 190 26.8
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 4.2e-06 55.8 174 28.2
FvH4_4g37280 Fragaria vesca HOM05D000727 ORTHO05D000541 4.2e-06 55.8 181 26.0
Potri.007G000900 Populus trichocarpa HOM05D000727 ORTHO05D000541 4.2e-06 55.8 164 29.3
CiPaw.16G001200 Carya illinoinensis HOM05D000727 ORTHO05D000541 5.4e-06 55.5 168 30.4
AUR62012352 Chenopodium quinoa HOM05D038520 ORTHO05D009839 5.4e-06 55.5 95 36.8
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 5.4e-06 55.5 209 25.4
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 7.1e-06 55.1 181 27.6


User provided reference genes

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