Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.8e-136 489.2 233 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.2e-116 423.3 214 91.6
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.5e-111 406.4 231 83.1
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.8e-110 402.1 231 80.5
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.8e-110 402.1 231 80.1
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 6.3e-110 401.0 231 80.1
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.8e-109 399.4 214 86.0
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.4e-109 399.1 231 80.5
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 9.2e-109 397.1 214 84.6
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-108 396.7 231 80.5
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 3.5e-108 395.2 231 77.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.5e-108 394.8 231 81.0
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 5.9e-108 394.4 214 85.0
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.3e-107 393.3 224 80.4
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 6.6e-107 391.0 231 79.2
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 8.6e-107 390.6 231 78.8
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.5e-106 389.0 214 82.7
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.2e-105 386.7 231 78.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 2.1e-105 386.0 230 76.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.1e-105 384.4 231 77.5
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.1e-105 384.4 231 77.5
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.0e-105 384.0 231 77.9
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 8.0e-105 384.0 244 75.8
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.4e-104 383.3 214 82.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.8e-104 382.9 214 82.2
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.3e-104 382.5 194 90.2
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.3e-104 382.5 214 81.8
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.3e-104 382.5 231 77.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.0e-104 382.1 214 79.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 5.2e-104 381.3 214 81.8
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 5.2e-104 381.3 214 82.7
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 6.8e-104 380.9 214 79.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.2e-103 380.2 231 76.6
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.6e-103 379.0 214 81.8
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.4e-103 378.6 214 80.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 4.4e-103 378.3 231 75.8
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 9.8e-103 377.1 214 81.3
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.2e-102 375.9 231 75.8
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.9e-102 375.6 231 76.2
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.9e-102 375.6 231 75.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.7e-102 375.2 214 80.8
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 3.7e-102 375.2 231 74.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 4.9e-102 374.8 214 79.0
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 8.3e-102 374.0 231 75.3
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.1e-101 373.6 220 80.0
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.8e-101 372.9 214 78.0
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.4e-101 372.5 231 75.8
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.4e-101 371.3 214 79.0
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 5.4e-101 371.3 214 78.5
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 5.4e-101 371.3 214 79.9
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.0e-101 370.9 231 75.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 9.2e-101 370.5 214 78.5
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.2e-100 370.2 214 78.5
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.2e-100 370.2 214 79.0
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.6e-100 369.8 231 75.8
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.6e-100 369.8 214 78.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.0e-100 369.4 214 79.9
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.7e-100 369.0 231 74.9
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.7e-100 369.0 231 73.6
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 2.7e-100 369.0 219 76.7
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.7e-100 369.0 214 79.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.5e-100 368.6 231 74.0
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 3.5e-100 368.6 214 79.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.3e-99 366.7 214 78.5
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-99 366.7 231 73.6
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.3e-99 366.7 214 79.4
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.7e-99 366.3 231 74.5
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-99 366.3 219 77.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.3e-99 365.9 231 73.2
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.9e-99 365.2 187 87.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.9e-99 365.2 214 77.1
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.0e-99 364.8 231 72.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.1e-98 363.6 231 72.7
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.1e-98 363.6 231 73.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.5e-98 363.2 231 74.0
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 2.5e-98 362.5 231 73.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.5e-98 362.5 231 73.2
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 2.5e-98 362.5 231 73.2
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-98 362.5 245 71.8
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.5e-98 362.5 231 72.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.3e-98 361.7 231 71.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 4.3e-98 361.7 231 73.2
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 4.3e-98 361.7 231 73.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 4.3e-98 361.7 231 72.3
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 4.3e-98 361.7 214 77.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.6e-98 361.3 231 71.4
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.6e-98 361.3 227 75.8
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.6e-98 361.3 245 71.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 9.5e-98 360.5 214 74.8
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.2e-97 360.1 231 74.0
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.2e-97 360.1 231 72.3
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.6e-97 359.8 214 75.7
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.1e-97 359.4 214 73.8
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.6e-97 358.6 231 71.0
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.0e-97 357.5 245 71.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.4e-96 356.7 230 71.7
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.8e-96 356.3 214 72.9
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.0e-96 355.1 215 75.3
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 6.8e-96 354.4 231 70.1
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.9e-96 354.0 231 70.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.5e-95 353.2 207 77.3
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.5e-95 353.2 214 74.8
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.0e-95 352.8 231 68.8
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 3.4e-95 352.1 214 71.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 4.4e-95 351.7 214 75.7
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.7e-94 349.7 231 72.3
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.2e-94 349.4 207 74.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 3.7e-94 348.6 231 69.3
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 6.4e-94 347.8 214 72.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.9e-93 346.3 214 74.8
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.4e-93 345.9 214 72.0
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 5.4e-93 344.7 231 71.4
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 7.0e-93 344.4 203 76.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 2.0e-92 342.8 214 73.4
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.0e-92 342.8 194 79.4
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 6.0e-92 341.3 231 70.1
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-91 338.6 198 79.8
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.1e-90 337.0 204 78.4
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-90 336.3 213 76.1
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.3e-90 335.1 210 72.9
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.1e-89 332.8 231 66.7
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.2e-89 331.3 204 77.0
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 8.1e-89 330.9 210 72.4
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.0e-88 328.6 210 71.0
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.4e-87 325.1 204 76.0
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.9e-86 322.4 175 81.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.7e-86 322.0 224 71.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 6.4e-86 321.2 231 64.9
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 7.1e-85 317.8 210 69.5
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 3.5e-84 315.5 321 53.0
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 8.9e-80 300.8 219 64.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.6e-75 284.6 203 66.0
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.1e-73 279.6 179 72.1
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.0e-67 260.8 214 56.5
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.4e-64 250.4 207 59.9
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 4.0e-64 248.8 214 51.4
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.6e-63 246.1 207 60.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 6.2e-57 224.9 194 54.6
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 6.2e-57 224.9 137 75.2
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 8.1e-57 224.6 214 49.1
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.4e-56 223.8 175 58.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.6e-52 208.8 231 48.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.2e-46 189.9 222 43.2
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.5e-45 186.4 103 76.7
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.1e-44 183.3 129 65.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-34 150.2 215 41.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-25 120.9 65 78.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 7.2e-21 105.1 67 68.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 5.2e-19 99.0 59 74.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.1e-16 89.4 165 37.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 3.2e-13 79.7 48 70.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 3.2e-13 79.7 48 70.8
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.7e-12 75.9 47 68.1
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.3e-06 57.8 47 57.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 8.5e-06 55.1 53 56.6
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 8.5e-06 55.1 53 56.6
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 8.5e-06 55.1 53 56.6


User provided reference genes

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